Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC120114.3-201ENST00000611923 658 ntBASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 PMS2P1-201ENST00000431037 1228 ntBASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 REXO1L6P-202ENST00000619970 1078 ntBASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 RCC2P3-201ENST00000418112 1537 ntBASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHGA1Q9Y5H4 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 AL512353.2-201ENST00000448759 1962 ntBASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 LINC01006-201ENST00000333319 2292 ntBASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 AKR1C7P-201ENST00000305623 895 ntBASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 MIR564-202ENST00000385049 94 ntBASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 IGHGP-201ENST00000390555 1178 ntBASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 AL590627.1-203ENST00000421194 1026 ntBASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 RN7SL606P-201ENST00000472779 293 ntBASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 AL592071.1-201ENST00000611956 408 ntBASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHGA1Q9Y5H4 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 GABARAPL3-202ENST00000624044 1851 ntBASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 AC008556.1-201ENST00000610908 2040 ntBASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PCDHGA1Q9Y5H4 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms