Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDX2Q99626 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDX2Q99626 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.49■□□□□ 0.71
CDX2Q99626 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDX2Q99626 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
CDX2Q99626 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDX2Q99626 ABCD1P5-201ENST00000445663 754 ntBASIC19.49■□□□□ 0.71
CDX2Q99626 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.49■□□□□ 0.71
CDX2Q99626 RBM7-207ENST00000544582 692 ntTSL 3 BASIC19.49■□□□□ 0.71
CDX2Q99626 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.49■□□□□ 0.71
CDX2Q99626 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
CDX2Q99626 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC19.49■□□□□ 0.71
CDX2Q99626 AC107918.4-202ENST00000641623 219 ntBASIC19.49■□□□□ 0.71
CDX2Q99626 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.49■□□□□ 0.71
CDX2Q99626 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CDX2Q99626 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.49■□□□□ 0.71
CDX2Q99626 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDX2Q99626 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.49■□□□□ 0.71
CDX2Q99626 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CDX2Q99626 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CDX2Q99626 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CDX2Q99626 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CDX2Q99626 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.48■□□□□ 0.71
CDX2Q99626 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CDX2Q99626 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CDX2Q99626 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CDX2Q99626 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CDX2Q99626 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CDX2Q99626 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CDX2Q99626 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.48■□□□□ 0.71
CDX2Q99626 KRT18P2-201ENST00000447938 1258 ntBASIC19.48■□□□□ 0.71
CDX2Q99626 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
CDX2Q99626 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC19.48■□□□□ 0.71
CDX2Q99626 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.48■□□□□ 0.71
CDX2Q99626 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.48■□□□□ 0.71
CDX2Q99626 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC19.48■□□□□ 0.71
CDX2Q99626 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.48■□□□□ 0.71
CDX2Q99626 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC19.48■□□□□ 0.71
CDX2Q99626 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.48■□□□□ 0.71
CDX2Q99626 AC093028.1-201ENST00000622998 982 ntBASIC19.48■□□□□ 0.71
CDX2Q99626 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CDX2Q99626 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CDX2Q99626 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CDX2Q99626 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CDX2Q99626 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.48■□□□□ 0.71
CDX2Q99626 AC063926.2-201ENST00000623766 1308 ntBASIC19.48■□□□□ 0.71
CDX2Q99626 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CDX2Q99626 SDHAP1-207ENST00000440850 2000 ntBASIC19.47■□□□□ 0.71
CDX2Q99626 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CDX2Q99626 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CDX2Q99626 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.47■□□□□ 0.71
CDX2Q99626 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.47■□□□□ 0.71
CDX2Q99626 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CDX2Q99626 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CDX2Q99626 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CDX2Q99626 GK-202ENST00000378941 458 ntTSL 3 BASIC19.47■□□□□ 0.71
CDX2Q99626 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.47■□□□□ 0.71
CDX2Q99626 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.47■□□□□ 0.71
CDX2Q99626 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.47■□□□□ 0.71
CDX2Q99626 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC19.47■□□□□ 0.71
CDX2Q99626 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.47■□□□□ 0.71
CDX2Q99626 AC190387.1-201ENST00000551683 408 ntBASIC19.47■□□□□ 0.71
CDX2Q99626 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.47■□□□□ 0.71
CDX2Q99626 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
CDX2Q99626 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.47■□□□□ 0.71
CDX2Q99626 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CDX2Q99626 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CDX2Q99626 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CDX2Q99626 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CDX2Q99626 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CDX2Q99626 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CDX2Q99626 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CDX2Q99626 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CDX2Q99626 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.46■□□□□ 0.71
CDX2Q99626 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDX2Q99626 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.46■□□□□ 0.71
CDX2Q99626 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CDX2Q99626 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
CDX2Q99626 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDX2Q99626 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC19.46■□□□□ 0.71
CDX2Q99626 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CDX2Q99626 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CDX2Q99626 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.46■□□□□ 0.71
CDX2Q99626 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC19.46■□□□□ 0.71
CDX2Q99626 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CDX2Q99626 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDX2Q99626 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC19.46■□□□□ 0.71
CDX2Q99626 MTDHP4-201ENST00000600287 670 ntBASIC19.46■□□□□ 0.71
CDX2Q99626 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.46■□□□□ 0.71
CDX2Q99626 AF228730.6-201ENST00000641497 218 ntBASIC19.46■□□□□ 0.71
CDX2Q99626 AC084121.3-201ENST00000641716 218 ntBASIC19.46■□□□□ 0.71
CDX2Q99626 AC105233.6-201ENST00000642093 218 ntBASIC19.46■□□□□ 0.71
CDX2Q99626 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CDX2Q99626 AC133561.1-201ENST00000568600 2415 ntBASIC19.46■□□□□ 0.71
CDX2Q99626 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.46■□□□□ 0.71
CDX2Q99626 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDX2Q99626 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDX2Q99626 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDX2Q99626 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.45■□□□□ 0.7
CDX2Q99626 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms