Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 TEN1-204ENST00000588202 862 ntTSL 3 BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 AC091607.1-201ENST00000490318 1060 ntBASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 AC233702.3-201ENST00000578656 1387 ntBASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 CYP51A1P1-201ENST00000492267 1507 ntBASIC24.61■■□□□ 1.53
USHBP1Q8N6Y0 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
USHBP1Q8N6Y0 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC24.6■■□□□ 1.53
USHBP1Q8N6Y0 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
USHBP1Q8N6Y0 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
USHBP1Q8N6Y0 IGHGP-201ENST00000390555 1178 ntBASIC24.6■■□□□ 1.53
USHBP1Q8N6Y0 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
USHBP1Q8N6Y0 AC104819.1-201ENST00000504587 486 ntBASIC24.6■■□□□ 1.53
USHBP1Q8N6Y0 GPR32P1-201ENST00000601788 811 ntBASIC24.6■■□□□ 1.53
USHBP1Q8N6Y0 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC24.6■■□□□ 1.53
USHBP1Q8N6Y0 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC24.6■■□□□ 1.53
USHBP1Q8N6Y0 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
USHBP1Q8N6Y0 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC24.6■■□□□ 1.53
USHBP1Q8N6Y0 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
USHBP1Q8N6Y0 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
USHBP1Q8N6Y0 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
USHBP1Q8N6Y0 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
USHBP1Q8N6Y0 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC24.59■■□□□ 1.53
USHBP1Q8N6Y0 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC24.59■■□□□ 1.53
USHBP1Q8N6Y0 AP005901.3-202ENST00000581653 237 ntBASIC24.59■■□□□ 1.53
USHBP1Q8N6Y0 AL121772.3-201ENST00000610840 674 ntBASIC24.59■■□□□ 1.53
USHBP1Q8N6Y0 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
USHBP1Q8N6Y0 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
USHBP1Q8N6Y0 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
USHBP1Q8N6Y0 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
USHBP1Q8N6Y0 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
USHBP1Q8N6Y0 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 Z98044.1-201ENST00000632503 1764 ntBASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 AC090616.6-201ENST00000582640 721 ntBASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 AC099336.1-202ENST00000602961 463 ntBASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 AL592071.1-201ENST00000611956 408 ntBASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
USHBP1Q8N6Y0 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC24.58■■□□□ 1.52
USHBP1Q8N6Y0 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC24.58■■□□□ 1.52
USHBP1Q8N6Y0 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 AL032819.2-201ENST00000624543 2162 ntBASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 AL357033.4-201ENST00000617703 1807 ntBASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC24.57■■□□□ 1.52
USHBP1Q8N6Y0 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms