Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
KRT40Q6A162 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC21.64■■□□□ 1.06
KRT40Q6A162 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
KRT40Q6A162 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
KRT40Q6A162 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC21.64■■□□□ 1.06
KRT40Q6A162 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC21.64■■□□□ 1.05
KRT40Q6A162 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
KRT40Q6A162 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
KRT40Q6A162 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.64■■□□□ 1.05
KRT40Q6A162 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
KRT40Q6A162 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC21.64■■□□□ 1.05
KRT40Q6A162 WWOX-216ENST00000569818 525 ntBASIC21.64■■□□□ 1.05
KRT40Q6A162 AP005242.2-201ENST00000580065 1175 ntBASIC21.64■■□□□ 1.05
KRT40Q6A162 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.64■■□□□ 1.05
KRT40Q6A162 AL121894.2-201ENST00000602977 491 ntBASIC21.64■■□□□ 1.05
KRT40Q6A162 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.64■■□□□ 1.05
KRT40Q6A162 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
KRT40Q6A162 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.05
KRT40Q6A162 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
KRT40Q6A162 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
KRT40Q6A162 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
KRT40Q6A162 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
KRT40Q6A162 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC21.64■■□□□ 1.05
KRT40Q6A162 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
KRT40Q6A162 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
KRT40Q6A162 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
KRT40Q6A162 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
KRT40Q6A162 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
KRT40Q6A162 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC21.64■■□□□ 1.05
KRT40Q6A162 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.63■■□□□ 1.05
KRT40Q6A162 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 UNC93B2-201ENST00000285383 730 ntBASIC21.63■■□□□ 1.05
KRT40Q6A162 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.63■■□□□ 1.05
KRT40Q6A162 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC21.63■■□□□ 1.05
KRT40Q6A162 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC21.63■■□□□ 1.05
KRT40Q6A162 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
KRT40Q6A162 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.63■■□□□ 1.05
KRT40Q6A162 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
KRT40Q6A162 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC21.63■■□□□ 1.05
KRT40Q6A162 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC21.63■■□□□ 1.05
KRT40Q6A162 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.63■■□□□ 1.05
KRT40Q6A162 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
KRT40Q6A162 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21.62■■□□□ 1.05
KRT40Q6A162 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
KRT40Q6A162 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC21.62■■□□□ 1.05
KRT40Q6A162 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC21.62■■□□□ 1.05
KRT40Q6A162 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
KRT40Q6A162 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
KRT40Q6A162 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
KRT40Q6A162 BUB3-202ENST00000368859 667 ntTSL 3 BASIC21.62■■□□□ 1.05
KRT40Q6A162 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
KRT40Q6A162 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC21.62■■□□□ 1.05
KRT40Q6A162 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC21.62■■□□□ 1.05
KRT40Q6A162 AC010947.1-201ENST00000623454 693 ntBASIC21.62■■□□□ 1.05
KRT40Q6A162 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
KRT40Q6A162 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
KRT40Q6A162 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
KRT40Q6A162 AC126763.1-201ENST00000552015 2118 ntBASIC21.62■■□□□ 1.05
KRT40Q6A162 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
KRT40Q6A162 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC21.62■■□□□ 1.05
KRT40Q6A162 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
KRT40Q6A162 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
KRT40Q6A162 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.62■■□□□ 1.05
KRT40Q6A162 AC008556.1-201ENST00000610908 2040 ntBASIC21.62■■□□□ 1.05
KRT40Q6A162 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC21.61■■□□□ 1.05
KRT40Q6A162 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
KRT40Q6A162 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC21.61■■□□□ 1.05
KRT40Q6A162 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
KRT40Q6A162 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
KRT40Q6A162 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
KRT40Q6A162 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.61■■□□□ 1.05
KRT40Q6A162 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.61■■□□□ 1.05
KRT40Q6A162 AC090164.3-201ENST00000610780 2143 ntBASIC21.61■■□□□ 1.05
KRT40Q6A162 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
KRT40Q6A162 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
KRT40Q6A162 GPAT2P1-201ENST00000444924 1672 ntBASIC21.61■■□□□ 1.05
KRT40Q6A162 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC21.61■■□□□ 1.05
KRT40Q6A162 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC21.61■■□□□ 1.05
KRT40Q6A162 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC21.61■■□□□ 1.05
KRT40Q6A162 AL023284.2-201ENST00000405850 579 ntBASIC21.61■■□□□ 1.05
KRT40Q6A162 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC21.61■■□□□ 1.05
KRT40Q6A162 CA15P1-201ENST00000481698 905 ntBASIC21.61■■□□□ 1.05
KRT40Q6A162 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC21.61■■□□□ 1.05
KRT40Q6A162 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC21.61■■□□□ 1.05
KRT40Q6A162 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms