Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
CCDC58Q4VC31 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.26
CCDC58Q4VC31 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 AC018695.7-201ENST00000624587 2492 ntBASIC16.7■□□□□ 0.26
CCDC58Q4VC31 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 PNN-205ENST00000556530 601 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC58Q4VC31 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 BCL2-203ENST00000589955 5011 ntBASIC16.69■□□□□ 0.26
CCDC58Q4VC31 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 GAS2L1P1-201ENST00000420145 1480 ntBASIC16.69■□□□□ 0.26
CCDC58Q4VC31 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 DUSP5P2-201ENST00000426873 1033 ntBASIC16.69■□□□□ 0.26
CCDC58Q4VC31 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC58Q4VC31 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 RHOD-202ENST00000532559 538 ntTSL 3 BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 AC092118.2-201ENST00000613495 667 ntBASIC16.68■□□□□ 0.26
CCDC58Q4VC31 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms