Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CXCL12P48061 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.57■□□□□ 0.56
CXCL12P48061 TEX21P-204ENST00000641479 1693 ntBASIC18.57■□□□□ 0.56
CXCL12P48061 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
CXCL12P48061 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.57■□□□□ 0.56
CXCL12P48061 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CXCL12P48061 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.56■□□□□ 0.56
CXCL12P48061 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.56■□□□□ 0.56
CXCL12P48061 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CXCL12P48061 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.56■□□□□ 0.56
CXCL12P48061 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CXCL12P48061 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CXCL12P48061 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CXCL12P48061 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CXCL12P48061 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.56■□□□□ 0.56
CXCL12P48061 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CXCL12P48061 FAM220CP-201ENST00000395253 831 ntBASIC18.56■□□□□ 0.56
CXCL12P48061 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.56■□□□□ 0.56
CXCL12P48061 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
CXCL12P48061 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.56■□□□□ 0.56
CXCL12P48061 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CXCL12P48061 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.56■□□□□ 0.56
CXCL12P48061 AC008608.2-201ENST00000606089 416 ntBASIC18.56■□□□□ 0.56
CXCL12P48061 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.56■□□□□ 0.56
CXCL12P48061 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CXCL12P48061 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CXCL12P48061 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CXCL12P48061 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.56■□□□□ 0.56
CXCL12P48061 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
CXCL12P48061 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CXCL12P48061 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CXCL12P48061 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CXCL12P48061 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CXCL12P48061 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CXCL12P48061 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CXCL12P48061 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
CXCL12P48061 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CXCL12P48061 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
CXCL12P48061 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CXCL12P48061 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC18.55■□□□□ 0.56
CXCL12P48061 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.55■□□□□ 0.56
CXCL12P48061 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.55■□□□□ 0.56
CXCL12P48061 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.55■□□□□ 0.56
CXCL12P48061 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.55■□□□□ 0.56
CXCL12P48061 MIR940-201ENST00000401276 94 ntBASIC18.55■□□□□ 0.56
CXCL12P48061 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.55■□□□□ 0.56
CXCL12P48061 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CXCL12P48061 AC132008.2-207ENST00000454517 770 ntBASIC18.55■□□□□ 0.56
CXCL12P48061 RPL13AP23-201ENST00000480739 586 ntBASIC18.55■□□□□ 0.56
CXCL12P48061 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.55■□□□□ 0.56
CXCL12P48061 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CXCL12P48061 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.55■□□□□ 0.56
CXCL12P48061 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.55■□□□□ 0.56
CXCL12P48061 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
CXCL12P48061 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CXCL12P48061 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.55■□□□□ 0.56
CXCL12P48061 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CXCL12P48061 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CXCL12P48061 ZNF259P1-201ENST00000407656 1365 ntBASIC18.55■□□□□ 0.56
CXCL12P48061 AC243591.1-201ENST00000452967 1364 ntBASIC18.55■□□□□ 0.56
CXCL12P48061 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL12P48061 AC092667.1-201ENST00000434301 2586 ntBASIC18.54■□□□□ 0.56
CXCL12P48061 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL12P48061 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL12P48061 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL12P48061 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL12P48061 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CXCL12P48061 BX842568.4-201ENST00000421222 227 ntBASIC18.54■□□□□ 0.56
CXCL12P48061 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.54■□□□□ 0.56
CXCL12P48061 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL12P48061 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL12P48061 AC096582.2-201ENST00000510860 516 ntBASIC18.54■□□□□ 0.56
CXCL12P48061 AC139887.3-201ENST00000568585 713 ntBASIC18.54■□□□□ 0.56
CXCL12P48061 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.54■□□□□ 0.56
CXCL12P48061 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.54■□□□□ 0.56
CXCL12P48061 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL12P48061 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
CXCL12P48061 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL12P48061 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CXCL12P48061 FEM1AP3-201ENST00000403722 1741 ntBASIC18.54■□□□□ 0.56
CXCL12P48061 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.54■□□□□ 0.56
CXCL12P48061 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL12P48061 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL12P48061 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL12P48061 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CXCL12P48061 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
CXCL12P48061 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CXCL12P48061 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.53■□□□□ 0.56
CXCL12P48061 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.53■□□□□ 0.56
CXCL12P48061 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.53■□□□□ 0.56
CXCL12P48061 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.53■□□□□ 0.56
CXCL12P48061 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.53■□□□□ 0.56
CXCL12P48061 AC073648.2-201ENST00000510116 352 ntBASIC18.53■□□□□ 0.56
CXCL12P48061 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.53■□□□□ 0.56
CXCL12P48061 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.53■□□□□ 0.56
CXCL12P48061 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.53■□□□□ 0.56
CXCL12P48061 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms