Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
CUX1P39880 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
CUX1P39880 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
CUX1P39880 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC31.25■■■□□ 2.59
CUX1P39880 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC31.25■■■□□ 2.59
CUX1P39880 POLD2P1-201ENST00000511220 997 ntBASIC31.25■■■□□ 2.59
CUX1P39880 KRT18P41-201ENST00000518924 1277 ntBASIC31.25■■■□□ 2.59
CUX1P39880 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC31.25■■■□□ 2.59
CUX1P39880 AC064862.7-201ENST00000604520 867 ntBASIC31.25■■■□□ 2.59
CUX1P39880 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
CUX1P39880 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
CUX1P39880 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
CUX1P39880 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
CUX1P39880 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
CUX1P39880 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
CUX1P39880 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
CUX1P39880 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
CUX1P39880 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC31.24■■■□□ 2.59
CUX1P39880 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC31.24■■■□□ 2.59
CUX1P39880 AC009065.1-201ENST00000564055 1225 ntBASIC31.24■■■□□ 2.59
CUX1P39880 PAM16-208ENST00000573553 722 ntTSL 2 BASIC31.24■■■□□ 2.59
CUX1P39880 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC31.24■■■□□ 2.59
CUX1P39880 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC31.24■■■□□ 2.59
CUX1P39880 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC31.24■■■□□ 2.59
CUX1P39880 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC31.24■■■□□ 2.59
CUX1P39880 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC31.24■■■□□ 2.59
CUX1P39880 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CUX1P39880 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CUX1P39880 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC31.24■■■□□ 2.59
CUX1P39880 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CUX1P39880 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC31.24■■■□□ 2.59
CUX1P39880 POM121L3P-201ENST00000419331 1163 ntBASIC31.24■■■□□ 2.59
CUX1P39880 RNPS1P1-201ENST00000507437 918 ntBASIC31.24■■■□□ 2.59
CUX1P39880 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CUX1P39880 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC31.24■■■□□ 2.59
CUX1P39880 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
CUX1P39880 FP475955.4-201ENST00000623131 1990 ntBASIC31.23■■■□□ 2.59
CUX1P39880 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
CUX1P39880 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
CUX1P39880 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
CUX1P39880 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC31.23■■■□□ 2.59
CUX1P39880 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC31.23■■■□□ 2.59
CUX1P39880 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC31.23■■■□□ 2.59
CUX1P39880 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC31.23■■■□□ 2.59
CUX1P39880 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC31.23■■■□□ 2.59
CUX1P39880 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC31.22■■■□□ 2.59
CUX1P39880 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
CUX1P39880 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC31.22■■■□□ 2.59
CUX1P39880 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC31.22■■■□□ 2.59
CUX1P39880 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
CUX1P39880 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC31.22■■■□□ 2.59
CUX1P39880 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC31.22■■■□□ 2.59
CUX1P39880 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC31.22■■■□□ 2.59
CUX1P39880 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC31.22■■■□□ 2.59
CUX1P39880 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC31.22■■■□□ 2.59
CUX1P39880 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC31.22■■■□□ 2.59
CUX1P39880 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC31.22■■■□□ 2.59
CUX1P39880 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC31.21■■■□□ 2.59
CUX1P39880 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC31.21■■■□□ 2.59
CUX1P39880 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC31.21■■■□□ 2.59
CUX1P39880 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC31.21■■■□□ 2.59
CUX1P39880 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
CUX1P39880 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC31.21■■■□□ 2.59
CUX1P39880 AF186996.4-201ENST00000467186 377 ntBASIC31.21■■■□□ 2.59
CUX1P39880 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC31.21■■■□□ 2.59
CUX1P39880 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
CUX1P39880 LITAF-211ENST00000572255 516 ntTSL 4 BASIC31.21■■■□□ 2.59
CUX1P39880 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC31.21■■■□□ 2.59
CUX1P39880 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC31.21■■■□□ 2.59
CUX1P39880 HEIH-201ENST00000623091 1652 ntBASIC31.2■■■□□ 2.59
CUX1P39880 AC141586.3-201ENST00000562166 1838 ntBASIC31.2■■■□□ 2.59
CUX1P39880 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
CUX1P39880 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
CUX1P39880 HNRNPDP1-201ENST00000439535 754 ntBASIC31.2■■■□□ 2.59
CUX1P39880 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC31.2■■■□□ 2.59
CUX1P39880 AC011840.4-201ENST00000578471 627 ntBASIC31.2■■■□□ 2.59
CUX1P39880 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC31.2■■■□□ 2.58
CUX1P39880 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
CUX1P39880 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
CUX1P39880 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
CUX1P39880 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CUX1P39880 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
CUX1P39880 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CUX1P39880 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
CUX1P39880 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CUX1P39880 AL355877.3-201ENST00000622820 899 ntBASIC31.19■■■□□ 2.58
CUX1P39880 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CUX1P39880 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CUX1P39880 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC31.19■■■□□ 2.58
CUX1P39880 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CUX1P39880 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC31.19■■■□□ 2.58
CUX1P39880 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC31.19■■■□□ 2.58
CUX1P39880 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
CUX1P39880 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC31.19■■■□□ 2.58
CUX1P39880 AP001269.4-201ENST00000609611 512 ntBASIC31.19■■■□□ 2.58
CUX1P39880 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC31.18■■■□□ 2.58
CUX1P39880 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC31.18■■■□□ 2.58
CUX1P39880 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC31.18■■■□□ 2.58
CUX1P39880 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
CUX1P39880 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms