Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.46■□□□□ 0.71
COL6A3P12111 UGT1A2P-201ENST00000454886 866 ntBASIC19.46■□□□□ 0.71
COL6A3P12111 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
COL6A3P12111 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.46■□□□□ 0.71
COL6A3P12111 MIR6799-201ENST00000620297 69 ntBASIC19.46■□□□□ 0.71
COL6A3P12111 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A3P12111 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A3P12111 MCCD1P1-208ENST00000445732 328 ntBASIC19.45■□□□□ 0.7
COL6A3P12111 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A3P12111 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A3P12111 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A3P12111 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A3P12111 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A3P12111 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A3P12111 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A3P12111 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.45■□□□□ 0.7
COL6A3P12111 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.45■□□□□ 0.7
COL6A3P12111 PARP8-206ENST00000503665 572 ntTSL 4 BASIC19.45■□□□□ 0.7
COL6A3P12111 AC109322.1-201ENST00000524499 1264 ntBASIC19.45■□□□□ 0.7
COL6A3P12111 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC19.45■□□□□ 0.7
COL6A3P12111 DUT-210ENST00000559935 569 ntTSL 3 BASIC19.45■□□□□ 0.7
COL6A3P12111 AC064836.3-201ENST00000607928 673 ntBASIC19.45■□□□□ 0.7
COL6A3P12111 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A3P12111 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.45■□□□□ 0.7
COL6A3P12111 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A3P12111 TP73-AS1-210ENST00000637775 1455 ntBASIC19.45■□□□□ 0.7
COL6A3P12111 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.44■□□□□ 0.7
COL6A3P12111 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A3P12111 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A3P12111 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A3P12111 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL6A3P12111 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.44■□□□□ 0.7
COL6A3P12111 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A3P12111 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A3P12111 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A3P12111 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A3P12111 AC004817.3-201ENST00000602957 2129 ntBASIC19.44■□□□□ 0.7
COL6A3P12111 AL391422.3-201ENST00000603791 2761 ntBASIC19.44■□□□□ 0.7
COL6A3P12111 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
COL6A3P12111 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
COL6A3P12111 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A3P12111 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
COL6A3P12111 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.44■□□□□ 0.7
COL6A3P12111 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A3P12111 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A3P12111 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL6A3P12111 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A3P12111 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A3P12111 EDF1-203ENST00000371649 790 ntTSL 2 BASIC19.44■□□□□ 0.7
COL6A3P12111 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC19.44■□□□□ 0.7
COL6A3P12111 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.44■□□□□ 0.7
COL6A3P12111 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
COL6A3P12111 AC093520.2-201ENST00000561830 333 ntBASIC19.44■□□□□ 0.7
COL6A3P12111 AP002414.3-201ENST00000589352 1468 ntBASIC19.44■□□□□ 0.7
COL6A3P12111 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A3P12111 AL353692.3-201ENST00000407031 1396 ntBASIC19.43■□□□□ 0.7
COL6A3P12111 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.43■□□□□ 0.7
COL6A3P12111 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
COL6A3P12111 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
COL6A3P12111 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A3P12111 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A3P12111 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.43■□□□□ 0.7
COL6A3P12111 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.43■□□□□ 0.7
COL6A3P12111 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
COL6A3P12111 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A3P12111 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
COL6A3P12111 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.43■□□□□ 0.7
COL6A3P12111 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.43■□□□□ 0.7
COL6A3P12111 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.43■□□□□ 0.7
COL6A3P12111 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.43■□□□□ 0.7
COL6A3P12111 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A3P12111 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A3P12111 AP001271.2-201ENST00000624018 1556 ntBASIC19.43■□□□□ 0.7
COL6A3P12111 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.43■□□□□ 0.7
COL6A3P12111 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A3P12111 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.43■□□□□ 0.7
COL6A3P12111 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A3P12111 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A3P12111 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.42■□□□□ 0.7
COL6A3P12111 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.42■□□□□ 0.7
COL6A3P12111 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A3P12111 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
COL6A3P12111 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
COL6A3P12111 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.42■□□□□ 0.7
COL6A3P12111 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A3P12111 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A3P12111 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC19.42■□□□□ 0.7
COL6A3P12111 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.42■□□□□ 0.7
COL6A3P12111 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.42■□□□□ 0.7
COL6A3P12111 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
COL6A3P12111 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A3P12111 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.42■□□□□ 0.7
COL6A3P12111 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A3P12111 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.42■□□□□ 0.7
COL6A3P12111 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
COL6A3P12111 KRT18P27-201ENST00000427733 1299 ntBASIC19.42■□□□□ 0.7
COL6A3P12111 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A3P12111 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A3P12111 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A3P12111 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms