Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VIMP08670 OR6D1P-203ENST00000641209 4860 ntBASIC18.78■□□□□ 0.6
VIMP08670 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.78■□□□□ 0.6
VIMP08670 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
VIMP08670 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.78■□□□□ 0.6
VIMP08670 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VIMP08670 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
VIMP08670 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
VIMP08670 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VIMP08670 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
VIMP08670 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.78■□□□□ 0.6
VIMP08670 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VIMP08670 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
VIMP08670 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VIMP08670 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.78■□□□□ 0.6
VIMP08670 AC080080.1-201ENST00000625121 2420 ntBASIC18.78■□□□□ 0.6
VIMP08670 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.77■□□□□ 0.6
VIMP08670 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.77■□□□□ 0.6
VIMP08670 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.77■□□□□ 0.6
VIMP08670 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VIMP08670 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VIMP08670 TNRC18P3-201ENST00000441896 2691 ntBASIC18.77■□□□□ 0.6
VIMP08670 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.77■□□□□ 0.6
VIMP08670 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VIMP08670 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VIMP08670 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VIMP08670 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
VIMP08670 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VIMP08670 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.77■□□□□ 0.6
VIMP08670 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VIMP08670 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.77■□□□□ 0.6
VIMP08670 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VIMP08670 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VIMP08670 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VIMP08670 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VIMP08670 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.77■□□□□ 0.6
VIMP08670 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.77■□□□□ 0.6
VIMP08670 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VIMP08670 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.77■□□□□ 0.6
VIMP08670 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.77■□□□□ 0.6
VIMP08670 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VIMP08670 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC18.77■□□□□ 0.6
VIMP08670 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.77■□□□□ 0.6
VIMP08670 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.77■□□□□ 0.6
VIMP08670 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
VIMP08670 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.77■□□□□ 0.6
VIMP08670 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VIMP08670 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VIMP08670 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.77■□□□□ 0.59
VIMP08670 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
VIMP08670 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.77■□□□□ 0.59
VIMP08670 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.77■□□□□ 0.59
VIMP08670 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
VIMP08670 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
VIMP08670 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.76■□□□□ 0.59
VIMP08670 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VIMP08670 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VIMP08670 KRT8P8-201ENST00000434750 1448 ntBASIC18.76■□□□□ 0.59
VIMP08670 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VIMP08670 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
VIMP08670 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VIMP08670 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.76■□□□□ 0.59
VIMP08670 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VIMP08670 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.76■□□□□ 0.59
VIMP08670 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VIMP08670 MIR638-201ENST00000385237 100 ntBASIC18.76■□□□□ 0.59
VIMP08670 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.76■□□□□ 0.59
VIMP08670 AL589743.5-201ENST00000616611 1050 ntBASIC18.76■□□□□ 0.59
VIMP08670 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
VIMP08670 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VIMP08670 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
VIMP08670 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VIMP08670 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.76■□□□□ 0.59
VIMP08670 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.76■□□□□ 0.59
VIMP08670 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VIMP08670 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.76■□□□□ 0.59
VIMP08670 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.76■□□□□ 0.59
VIMP08670 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VIMP08670 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.75■□□□□ 0.59
VIMP08670 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.75■□□□□ 0.59
VIMP08670 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.75■□□□□ 0.59
VIMP08670 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
VIMP08670 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 SLC25A6P5-201ENST00000435663 894 ntBASIC18.75■□□□□ 0.59
VIMP08670 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.75■□□□□ 0.59
VIMP08670 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
VIMP08670 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.75■□□□□ 0.59
VIMP08670 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.75■□□□□ 0.59
VIMP08670 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.75■□□□□ 0.59
VIMP08670 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
VIMP08670 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms