Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.04■□□□□ 0.48
CLIP3Q96DZ5 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 AL139384.1-201ENST00000612143 3047 ntBASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 TSPY5P-201ENST00000426936 936 ntBASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP3Q96DZ5 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 KRT8P45-201ENST00000414328 1447 ntBASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.02■□□□□ 0.48
CLIP3Q96DZ5 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLIP3Q96DZ5 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.02■□□□□ 0.47
CLIP3Q96DZ5 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CLIP3Q96DZ5 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLIP3Q96DZ5 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.02■□□□□ 0.47
CLIP3Q96DZ5 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CLIP3Q96DZ5 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CLIP3Q96DZ5 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.02■□□□□ 0.47
CLIP3Q96DZ5 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
CLIP3Q96DZ5 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.02■□□□□ 0.47
CLIP3Q96DZ5 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
CLIP3Q96DZ5 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLIP3Q96DZ5 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 HTR7P1-202ENST00000624664 4411 ntBASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 AC011558.1-201ENST00000623459 338 ntBASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLIP3Q96DZ5 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms