Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 MIR3652-201ENST00000579335 131 ntBASIC18.23■□□□□ 0.51
LMX1AQ8TE12 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
LMX1AQ8TE12 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 KRT8P26-201ENST00000534154 1276 ntBASIC18.22■□□□□ 0.51
LMX1AQ8TE12 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1AQ8TE12 AC093525.10-201ENST00000625130 1569 ntBASIC18.21■□□□□ 0.51
LMX1AQ8TE12 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 AC034236.2-201ENST00000606662 1610 ntBASIC18.21■□□□□ 0.51
LMX1AQ8TE12 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 MIR662-201ENST00000384847 95 ntBASIC18.21■□□□□ 0.51
LMX1AQ8TE12 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 PRELID1P1-202ENST00000567272 903 ntBASIC18.21■□□□□ 0.51
LMX1AQ8TE12 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 AL691432.3-201ENST00000621860 400 ntBASIC18.21■□□□□ 0.51
LMX1AQ8TE12 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1AQ8TE12 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 AC006333.2-201ENST00000607957 2099 ntBASIC18.2■□□□□ 0.5
LMX1AQ8TE12 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 TSPY22P-201ENST00000427496 604 ntBASIC18.2■□□□□ 0.5
LMX1AQ8TE12 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms