Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 LINC00167-201ENST00000530583 1419 ntBASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 KRT8P7-201ENST00000533003 1432 ntBASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 AC141586.3-201ENST00000562166 1838 ntBASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
USHBP1Q8N6Y0 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 AC034236.2-201ENST00000606662 1610 ntBASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 AC138894.3-201ENST00000603787 634 ntBASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
USHBP1Q8N6Y0 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 FP475955.4-201ENST00000623131 1990 ntBASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 AC007952.6-201ENST00000573168 2673 ntBASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 AC003957.1-201ENST00000625108 2673 ntBASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 BAALC-202ENST00000306391 243 ntTSL 5 BASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 BAALC-204ENST00000330955 222 ntTSL 5 BASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 AC104692.2-201ENST00000603054 253 ntBASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
USHBP1Q8N6Y0 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC24.64■■□□□ 1.54
USHBP1Q8N6Y0 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC24.64■■□□□ 1.54
USHBP1Q8N6Y0 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
USHBP1Q8N6Y0 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
USHBP1Q8N6Y0 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC24.64■■□□□ 1.54
USHBP1Q8N6Y0 KRT18P31-201ENST00000506277 1292 ntBASIC24.64■■□□□ 1.54
USHBP1Q8N6Y0 AC074051.2-201ENST00000565115 352 ntBASIC24.64■■□□□ 1.54
USHBP1Q8N6Y0 AC012615.1-201ENST00000565797 1299 ntBASIC24.64■■□□□ 1.54
USHBP1Q8N6Y0 TK1-205ENST00000590862 642 ntTSL 3 BASIC24.64■■□□□ 1.54
USHBP1Q8N6Y0 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
USHBP1Q8N6Y0 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC24.64■■□□□ 1.54
USHBP1Q8N6Y0 AC068587.9-201ENST00000641814 219 ntBASIC24.64■■□□□ 1.54
USHBP1Q8N6Y0 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC24.64■■□□□ 1.53
USHBP1Q8N6Y0 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
USHBP1Q8N6Y0 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
USHBP1Q8N6Y0 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC24.64■■□□□ 1.53
USHBP1Q8N6Y0 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
USHBP1Q8N6Y0 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.53
USHBP1Q8N6Y0 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 FAAHP1-202ENST00000446499 1238 ntBASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 AC091304.2-201ENST00000564639 760 ntBASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 IGHV3-41-201ENST00000613121 348 ntBASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 AC099343.3-201ENST00000605834 2503 ntBASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
USHBP1Q8N6Y0 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC24.62■■□□□ 1.53
USHBP1Q8N6Y0 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms