Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.36■□□□□ 0.37
BEST3Q8N1M1 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 AC091076.1-201ENST00000610741 619 ntBASIC17.36■□□□□ 0.37
BEST3Q8N1M1 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.36■□□□□ 0.37
BEST3Q8N1M1 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 KRT8P3-201ENST00000519669 1449 ntBASIC17.36■□□□□ 0.37
BEST3Q8N1M1 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
BEST3Q8N1M1 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 MCCD1P1-208ENST00000445732 328 ntBASIC17.35■□□□□ 0.37
BEST3Q8N1M1 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
BEST3Q8N1M1 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 AL121956.5-201ENST00000625261 221 ntBASIC17.34■□□□□ 0.37
BEST3Q8N1M1 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
BEST3Q8N1M1 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
BEST3Q8N1M1 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
BEST3Q8N1M1 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
BEST3Q8N1M1 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
BEST3Q8N1M1 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.33■□□□□ 0.37
BEST3Q8N1M1 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.33■□□□□ 0.37
BEST3Q8N1M1 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.33■□□□□ 0.37
BEST3Q8N1M1 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
BEST3Q8N1M1 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms