Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC25.36■■□□□ 1.65
NPHP3Q7Z494 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
NPHP3Q7Z494 PALM-208ENST00000592155 2272 ntTSL 4 BASIC25.36■■□□□ 1.65
NPHP3Q7Z494 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
NPHP3Q7Z494 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
NPHP3Q7Z494 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC25.36■■□□□ 1.65
NPHP3Q7Z494 CCS-201ENST00000310190 942 ntTSL 5 BASIC25.36■■□□□ 1.65
NPHP3Q7Z494 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
NPHP3Q7Z494 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC25.36■■□□□ 1.65
NPHP3Q7Z494 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
NPHP3Q7Z494 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC25.36■■□□□ 1.65
NPHP3Q7Z494 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC25.36■■□□□ 1.65
NPHP3Q7Z494 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC25.36■■□□□ 1.65
NPHP3Q7Z494 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
NPHP3Q7Z494 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
NPHP3Q7Z494 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
NPHP3Q7Z494 TREX1-205ENST00000625293 1783 ntBASIC25.35■■□□□ 1.65
NPHP3Q7Z494 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
NPHP3Q7Z494 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC25.35■■□□□ 1.65
NPHP3Q7Z494 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
NPHP3Q7Z494 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
NPHP3Q7Z494 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
NPHP3Q7Z494 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC25.35■■□□□ 1.65
NPHP3Q7Z494 THAP5-204ENST00000438865 868 ntTSL 2 BASIC25.35■■□□□ 1.65
NPHP3Q7Z494 FGFR3P6-201ENST00000457012 610 ntBASIC25.35■■□□□ 1.65
NPHP3Q7Z494 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC25.35■■□□□ 1.65
NPHP3Q7Z494 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
NPHP3Q7Z494 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC25.34■■□□□ 1.65
NPHP3Q7Z494 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC25.34■■□□□ 1.65
NPHP3Q7Z494 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC25.34■■□□□ 1.65
NPHP3Q7Z494 AC007375.3-201ENST00000600936 2314 ntBASIC25.34■■□□□ 1.65
NPHP3Q7Z494 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
NPHP3Q7Z494 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC25.34■■□□□ 1.65
NPHP3Q7Z494 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC25.34■■□□□ 1.65
NPHP3Q7Z494 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC25.34■■□□□ 1.65
NPHP3Q7Z494 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
NPHP3Q7Z494 AC116407.3-201ENST00000623905 1129 ntBASIC25.34■■□□□ 1.65
NPHP3Q7Z494 CAND2-206ENST00000626378 333 ntTSL 5 BASIC25.34■■□□□ 1.65
NPHP3Q7Z494 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
NPHP3Q7Z494 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.65
NPHP3Q7Z494 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC25.33■■□□□ 1.65
NPHP3Q7Z494 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC25.33■■□□□ 1.65
NPHP3Q7Z494 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
NPHP3Q7Z494 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC25.33■■□□□ 1.65
NPHP3Q7Z494 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC25.33■■□□□ 1.65
NPHP3Q7Z494 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC25.33■■□□□ 1.65
NPHP3Q7Z494 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC25.33■■□□□ 1.65
NPHP3Q7Z494 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
NPHP3Q7Z494 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
NPHP3Q7Z494 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC25.33■■□□□ 1.64
NPHP3Q7Z494 GGCT-205ENST00000409436 954 ntTSL 3 BASIC25.33■■□□□ 1.64
NPHP3Q7Z494 HNRNPDP1-201ENST00000439535 754 ntBASIC25.33■■□□□ 1.64
NPHP3Q7Z494 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC25.33■■□□□ 1.64
NPHP3Q7Z494 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
NPHP3Q7Z494 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC25.33■■□□□ 1.64
NPHP3Q7Z494 AC145285.3-201ENST00000564603 959 ntBASIC25.33■■□□□ 1.64
NPHP3Q7Z494 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
NPHP3Q7Z494 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC25.33■■□□□ 1.64
NPHP3Q7Z494 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC25.33■■□□□ 1.64
NPHP3Q7Z494 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
NPHP3Q7Z494 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
NPHP3Q7Z494 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC25.32■■□□□ 1.64
NPHP3Q7Z494 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC25.32■■□□□ 1.64
NPHP3Q7Z494 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
NPHP3Q7Z494 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
NPHP3Q7Z494 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
NPHP3Q7Z494 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
NPHP3Q7Z494 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
NPHP3Q7Z494 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC25.32■■□□□ 1.64
NPHP3Q7Z494 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC25.32■■□□□ 1.64
NPHP3Q7Z494 RBM17P3-201ENST00000417687 1192 ntBASIC25.32■■□□□ 1.64
NPHP3Q7Z494 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC25.32■■□□□ 1.64
NPHP3Q7Z494 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC25.32■■□□□ 1.64
NPHP3Q7Z494 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
NPHP3Q7Z494 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
NPHP3Q7Z494 AC099778.1-201ENST00000568593 1911 ntBASIC25.32■■□□□ 1.64
NPHP3Q7Z494 TEX21P-204ENST00000641479 1693 ntBASIC25.31■■□□□ 1.64
NPHP3Q7Z494 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 Z82202.1-201ENST00000623446 1880 ntBASIC25.31■■□□□ 1.64
NPHP3Q7Z494 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 HES2-202ENST00000377836 507 ntTSL 2 BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 AC055717.3-201ENST00000622967 595 ntBASIC25.31■■□□□ 1.64
NPHP3Q7Z494 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
NPHP3Q7Z494 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
NPHP3Q7Z494 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC25.3■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms