Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 AC079834.2-201ENST00000609776 1949 ntBASIC19.82■□□□□ 0.76
CHD9Q3L8U1 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 AL591684.3-201ENST00000605187 298 ntBASIC19.82■□□□□ 0.76
CHD9Q3L8U1 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 AL137060.1-201ENST00000618151 2648 ntBASIC19.82■□□□□ 0.76
CHD9Q3L8U1 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 MED15P5-201ENST00000423150 992 ntBASIC19.81■□□□□ 0.76
CHD9Q3L8U1 AP003733.1-201ENST00000491725 852 ntBASIC19.81■□□□□ 0.76
CHD9Q3L8U1 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CHD9Q3L8U1 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.8■□□□□ 0.76
CHD9Q3L8U1 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 GUSBP12-201ENST00000513727 720 ntBASIC19.8■□□□□ 0.76
CHD9Q3L8U1 DHDH-204ENST00000523250 634 ntTSL 5 BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHD9Q3L8U1 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 AC004967.1-201ENST00000453589 447 ntBASIC19.79■□□□□ 0.76
CHD9Q3L8U1 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 AL356488.2-201ENST00000602755 427 ntBASIC19.79■□□□□ 0.76
CHD9Q3L8U1 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 AC114341.1-201ENST00000618070 349 ntBASIC19.79■□□□□ 0.76
CHD9Q3L8U1 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.79■□□□□ 0.76
CHD9Q3L8U1 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CHD9Q3L8U1 KRT8P7-201ENST00000533003 1432 ntBASIC19.78■□□□□ 0.76
CHD9Q3L8U1 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms