Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 AC092597.1-201ENST00000487352 616 ntBASIC17.97■□□□□ 0.47
COL28A1Q2UY09 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 FOSL1P1-201ENST00000511041 816 ntBASIC17.96■□□□□ 0.47
COL28A1Q2UY09 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL28A1Q2UY09 AC022898.2-201ENST00000616822 1312 ntBASIC17.96■□□□□ 0.46
COL28A1Q2UY09 AC026471.1-201ENST00000564629 3026 ntBASIC17.96■□□□□ 0.46
COL28A1Q2UY09 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL28A1Q2UY09 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 AL121912.1-201ENST00000603683 238 ntBASIC17.95■□□□□ 0.46
COL28A1Q2UY09 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 LETM1P2-201ENST00000597330 2178 ntBASIC17.95■□□□□ 0.46
COL28A1Q2UY09 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL28A1Q2UY09 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms