Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 GOLGA6L17P-202ENST00000614358 1398 ntBASIC13.51□□□□□ -0.25
PRKDCP78527 AP005212.1-201ENST00000581547 1997 ntBASIC13.51□□□□□ -0.25
PRKDCP78527 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC13.51□□□□□ -0.25
PRKDCP78527 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
PRKDCP78527 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
PRKDCP78527 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PRKDCP78527 INTS4P1-201ENST00000438455 1935 ntBASIC13.51□□□□□ -0.25
PRKDCP78527 CENPM-204ENST00000402420 688 ntTSL 5 BASIC13.51□□□□□ -0.25
PRKDCP78527 KRT18P2-201ENST00000447938 1258 ntBASIC13.51□□□□□ -0.25
PRKDCP78527 GAPDHP21-201ENST00000450301 1010 ntBASIC13.51□□□□□ -0.25
PRKDCP78527 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC13.51□□□□□ -0.25
PRKDCP78527 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PRKDCP78527 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
PRKDCP78527 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC13.51□□□□□ -0.25
PRKDCP78527 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC13.51□□□□□ -0.25
PRKDCP78527 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 AP003733.1-201ENST00000491725 852 ntBASIC13.5□□□□□ -0.25
PRKDCP78527 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC13.5□□□□□ -0.25
PRKDCP78527 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC13.5□□□□□ -0.25
PRKDCP78527 AL691432.2-201ENST00000607222 2038 ntBASIC13.5□□□□□ -0.25
PRKDCP78527 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC13.5□□□□□ -0.25
PRKDCP78527 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC13.5□□□□□ -0.25
PRKDCP78527 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC13.5□□□□□ -0.25
PRKDCP78527 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
PRKDCP78527 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC13.5□□□□□ -0.25
PRKDCP78527 GK-202ENST00000378941 458 ntTSL 3 BASIC13.5□□□□□ -0.25
PRKDCP78527 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC13.5□□□□□ -0.25
PRKDCP78527 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 SIGLEC30P-201ENST00000455569 941 ntBASIC13.5□□□□□ -0.25
PRKDCP78527 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC13.5□□□□□ -0.25
PRKDCP78527 GUSBP12-201ENST00000513727 720 ntBASIC13.5□□□□□ -0.25
PRKDCP78527 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC13.5□□□□□ -0.25
PRKDCP78527 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC13.5□□□□□ -0.25
PRKDCP78527 DUX4L17-201ENST00000557360 1267 ntBASIC13.5□□□□□ -0.25
PRKDCP78527 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC13.5□□□□□ -0.25
PRKDCP78527 AC233723.2-201ENST00000623798 2106 ntBASIC13.5□□□□□ -0.25
PRKDCP78527 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC13.5□□□□□ -0.25
PRKDCP78527 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
PRKDCP78527 SDHAP1-207ENST00000440850 2000 ntBASIC13.5□□□□□ -0.25
PRKDCP78527 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
PRKDCP78527 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
PRKDCP78527 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC13.5□□□□□ -0.25
PRKDCP78527 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
PRKDCP78527 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
PRKDCP78527 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
PRKDCP78527 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC13.5□□□□□ -0.25
PRKDCP78527 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PRKDCP78527 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC13.49□□□□□ -0.25
PRKDCP78527 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC13.49□□□□□ -0.25
PRKDCP78527 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
PRKDCP78527 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
PRKDCP78527 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC13.49□□□□□ -0.25
PRKDCP78527 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
PRKDCP78527 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC13.49□□□□□ -0.25
PRKDCP78527 AC008556.1-201ENST00000610908 2040 ntBASIC13.49□□□□□ -0.25
PRKDCP78527 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
PRKDCP78527 HOXB1-202ENST00000577092 1414 ntBASIC13.49□□□□□ -0.25
PRKDCP78527 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
PRKDCP78527 TP73-AS1-210ENST00000637775 1455 ntBASIC13.49□□□□□ -0.25
PRKDCP78527 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC13.49□□□□□ -0.25
PRKDCP78527 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC13.49□□□□□ -0.25
PRKDCP78527 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
PRKDCP78527 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC13.49□□□□□ -0.25
PRKDCP78527 COX5A-206ENST00000568783 571 ntTSL 3 BASIC13.49□□□□□ -0.25
PRKDCP78527 AL390955.2-201ENST00000603032 514 ntBASIC13.49□□□□□ -0.25
PRKDCP78527 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC13.49□□□□□ -0.25
PRKDCP78527 AC093512.1-201ENST00000617969 520 ntBASIC13.49□□□□□ -0.25
PRKDCP78527 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC13.49□□□□□ -0.25
PRKDCP78527 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
PRKDCP78527 HEIH-201ENST00000623091 1652 ntBASIC13.49□□□□□ -0.25
PRKDCP78527 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
PRKDCP78527 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC13.49□□□□□ -0.25
PRKDCP78527 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
PRKDCP78527 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
PRKDCP78527 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
PRKDCP78527 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC13.49□□□□□ -0.25
PRKDCP78527 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC13.49□□□□□ -0.25
PRKDCP78527 PON3-205ENST00000451904 1053 ntTSL 3 BASIC13.49□□□□□ -0.25
PRKDCP78527 AC011840.4-201ENST00000578471 627 ntBASIC13.49□□□□□ -0.25
PRKDCP78527 AC092720.2-201ENST00000602388 1665 ntBASIC13.49□□□□□ -0.25
PRKDCP78527 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC13.49□□□□□ -0.25
PRKDCP78527 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
PRKDCP78527 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
PRKDCP78527 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
PRKDCP78527 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
PRKDCP78527 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms