Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
MSH6P52701 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
MSH6P52701 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC25.88■■□□□ 1.73
MSH6P52701 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
MSH6P52701 LBH-204ENST00000406087 559 ntTSL 4 BASIC25.88■■□□□ 1.73
MSH6P52701 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC25.88■■□□□ 1.73
MSH6P52701 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC25.88■■□□□ 1.73
MSH6P52701 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC25.88■■□□□ 1.73
MSH6P52701 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC25.88■■□□□ 1.73
MSH6P52701 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
MSH6P52701 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC25.88■■□□□ 1.73
MSH6P52701 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
MSH6P52701 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
MSH6P52701 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH6P52701 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC25.87■■□□□ 1.73
MSH6P52701 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH6P52701 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH6P52701 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH6P52701 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH6P52701 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH6P52701 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC25.87■■□□□ 1.73
MSH6P52701 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH6P52701 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH6P52701 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC25.87■■□□□ 1.73
MSH6P52701 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC25.87■■□□□ 1.73
MSH6P52701 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH6P52701 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC25.87■■□□□ 1.73
MSH6P52701 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
MSH6P52701 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC25.87■■□□□ 1.73
MSH6P52701 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC25.87■■□□□ 1.73
MSH6P52701 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC25.87■■□□□ 1.73
MSH6P52701 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH6P52701 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
MSH6P52701 TREX1-205ENST00000625293 1783 ntBASIC25.87■■□□□ 1.73
MSH6P52701 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
MSH6P52701 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC25.87■■□□□ 1.73
MSH6P52701 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
MSH6P52701 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
MSH6P52701 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
MSH6P52701 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH6P52701 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC25.87■■□□□ 1.73
MSH6P52701 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
MSH6P52701 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC25.87■■□□□ 1.73
MSH6P52701 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC25.86■■□□□ 1.73
MSH6P52701 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
MSH6P52701 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
MSH6P52701 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC25.86■■□□□ 1.73
MSH6P52701 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC25.86■■□□□ 1.73
MSH6P52701 IMP4-203ENST00000409935 958 ntTSL 5 BASIC25.86■■□□□ 1.73
MSH6P52701 DNAJB3-201ENST00000446806 729 ntBASIC25.86■■□□□ 1.73
MSH6P52701 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC25.86■■□□□ 1.73
MSH6P52701 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
MSH6P52701 AC034105.1-201ENST00000563488 319 ntBASIC25.86■■□□□ 1.73
MSH6P52701 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC25.86■■□□□ 1.73
MSH6P52701 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC25.86■■□□□ 1.73
MSH6P52701 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
MSH6P52701 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
MSH6P52701 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
MSH6P52701 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
MSH6P52701 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
MSH6P52701 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
MSH6P52701 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
MSH6P52701 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
MSH6P52701 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC25.85■■□□□ 1.73
MSH6P52701 MIR3687-2-201ENST00000577708 61 ntBASIC25.85■■□□□ 1.73
MSH6P52701 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
MSH6P52701 MIR3687-1-201ENST00000614492 61 ntBASIC25.85■■□□□ 1.73
MSH6P52701 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
MSH6P52701 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
MSH6P52701 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
MSH6P52701 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
MSH6P52701 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
MSH6P52701 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
MSH6P52701 PAN3-AS1-201ENST00000563843 1351 ntBASIC25.85■■□□□ 1.73
MSH6P52701 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
MSH6P52701 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC25.85■■□□□ 1.73
MSH6P52701 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
MSH6P52701 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC25.84■■□□□ 1.73
MSH6P52701 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
MSH6P52701 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
MSH6P52701 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
MSH6P52701 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
MSH6P52701 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
MSH6P52701 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC25.84■■□□□ 1.73
MSH6P52701 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC25.84■■□□□ 1.73
MSH6P52701 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
MSH6P52701 AC073314.1-201ENST00000568729 2216 ntBASIC25.84■■□□□ 1.73
MSH6P52701 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
MSH6P52701 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
MSH6P52701 CCS-201ENST00000310190 942 ntTSL 5 BASIC25.83■■□□□ 1.73
MSH6P52701 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC25.83■■□□□ 1.73
MSH6P52701 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
MSH6P52701 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC25.83■■□□□ 1.73
MSH6P52701 AC134684.3-201ENST00000641758 218 ntBASIC25.83■■□□□ 1.73
MSH6P52701 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC25.83■■□□□ 1.73
MSH6P52701 AC020907.5-201ENST00000624372 1936 ntBASIC25.83■■□□□ 1.73
MSH6P52701 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC25.83■■□□□ 1.73
MSH6P52701 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
MSH6P52701 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
MSH6P52701 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms