Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC009065.1-201ENST00000564055 1225 ntBASIC23.59■■□□□ 1.37
COL5A3P25940 AC139530.3-201ENST00000620344 690 ntBASIC23.59■■□□□ 1.37
COL5A3P25940 FEM1AP3-201ENST00000403722 1741 ntBASIC23.58■■□□□ 1.37
COL5A3P25940 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC23.58■■□□□ 1.37
COL5A3P25940 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
COL5A3P25940 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
COL5A3P25940 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC23.58■■□□□ 1.37
COL5A3P25940 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
COL5A3P25940 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
COL5A3P25940 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC23.58■■□□□ 1.37
COL5A3P25940 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC23.58■■□□□ 1.37
COL5A3P25940 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
COL5A3P25940 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC23.58■■□□□ 1.37
COL5A3P25940 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
COL5A3P25940 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC23.58■■□□□ 1.37
COL5A3P25940 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC23.58■■□□□ 1.37
COL5A3P25940 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
COL5A3P25940 AC113404.2-201ENST00000507884 177 ntBASIC23.58■■□□□ 1.37
COL5A3P25940 IGHV3-41-201ENST00000613121 348 ntBASIC23.58■■□□□ 1.37
COL5A3P25940 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
COL5A3P25940 AL157384.1-201ENST00000445995 2473 ntBASIC23.58■■□□□ 1.36
COL5A3P25940 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC23.57■■□□□ 1.36
COL5A3P25940 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
COL5A3P25940 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC23.57■■□□□ 1.36
COL5A3P25940 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
COL5A3P25940 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC23.57■■□□□ 1.36
COL5A3P25940 MED22-202ENST00000371999 987 ntTSL 3 BASIC23.57■■□□□ 1.36
COL5A3P25940 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC23.57■■□□□ 1.36
COL5A3P25940 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC23.57■■□□□ 1.36
COL5A3P25940 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC23.57■■□□□ 1.36
COL5A3P25940 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL5A3P25940 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
COL5A3P25940 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC23.57■■□□□ 1.36
COL5A3P25940 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL5A3P25940 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL5A3P25940 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC23.57■■□□□ 1.36
COL5A3P25940 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
COL5A3P25940 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL5A3P25940 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL5A3P25940 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL5A3P25940 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC23.56■■□□□ 1.36
COL5A3P25940 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC23.56■■□□□ 1.36
COL5A3P25940 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL5A3P25940 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL5A3P25940 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL5A3P25940 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC23.56■■□□□ 1.36
COL5A3P25940 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL5A3P25940 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL5A3P25940 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC23.56■■□□□ 1.36
COL5A3P25940 LINC01521-201ENST00000504184 1943 ntBASIC23.56■■□□□ 1.36
COL5A3P25940 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL5A3P25940 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL5A3P25940 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL5A3P25940 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL5A3P25940 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
COL5A3P25940 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL5A3P25940 AL031284.1-201ENST00000419297 478 ntBASIC23.56■■□□□ 1.36
COL5A3P25940 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC23.56■■□□□ 1.36
COL5A3P25940 FAM197Y8-203ENST00000450145 560 ntBASIC23.56■■□□□ 1.36
COL5A3P25940 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC23.56■■□□□ 1.36
COL5A3P25940 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL5A3P25940 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC23.56■■□□□ 1.36
COL5A3P25940 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL5A3P25940 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL5A3P25940 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL5A3P25940 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
COL5A3P25940 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
COL5A3P25940 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL5A3P25940 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL5A3P25940 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL5A3P25940 KRT18P58-201ENST00000527480 1120 ntBASIC23.55■■□□□ 1.36
COL5A3P25940 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC23.55■■□□□ 1.36
COL5A3P25940 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC23.55■■□□□ 1.36
COL5A3P25940 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC23.55■■□□□ 1.36
COL5A3P25940 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC23.55■■□□□ 1.36
COL5A3P25940 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL5A3P25940 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL5A3P25940 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
COL5A3P25940 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC23.54■■□□□ 1.36
COL5A3P25940 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL5A3P25940 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL5A3P25940 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL5A3P25940 AC141586.3-201ENST00000562166 1838 ntBASIC23.54■■□□□ 1.36
COL5A3P25940 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL5A3P25940 KRT18P13-201ENST00000400056 1290 ntBASIC23.54■■□□□ 1.36
COL5A3P25940 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL5A3P25940 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC23.54■■□□□ 1.36
COL5A3P25940 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC23.54■■□□□ 1.36
COL5A3P25940 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC23.54■■□□□ 1.36
COL5A3P25940 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
COL5A3P25940 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC23.54■■□□□ 1.36
COL5A3P25940 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL5A3P25940 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC23.54■■□□□ 1.36
COL5A3P25940 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
COL5A3P25940 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC23.54■■□□□ 1.36
COL5A3P25940 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC23.54■■□□□ 1.36
COL5A3P25940 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
COL5A3P25940 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL5A3P25940 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
COL5A3P25940 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms