Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VIMP08670 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.81■□□□□ 0.6
VIMP08670 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.81■□□□□ 0.6
VIMP08670 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.81■□□□□ 0.6
VIMP08670 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VIMP08670 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
VIMP08670 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.81■□□□□ 0.6
VIMP08670 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VIMP08670 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.81■□□□□ 0.6
VIMP08670 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.81■□□□□ 0.6
VIMP08670 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.81■□□□□ 0.6
VIMP08670 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VIMP08670 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VIMP08670 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
VIMP08670 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
VIMP08670 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
VIMP08670 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.8■□□□□ 0.6
VIMP08670 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VIMP08670 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 AL355472.2-201ENST00000422958 438 ntBASIC18.8■□□□□ 0.6
VIMP08670 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.8■□□□□ 0.6
VIMP08670 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.8■□□□□ 0.6
VIMP08670 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
VIMP08670 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VIMP08670 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 AC124067.4-201ENST00000519691 2379 ntBASIC18.79■□□□□ 0.6
VIMP08670 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
VIMP08670 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.79■□□□□ 0.6
VIMP08670 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VIMP08670 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.79■□□□□ 0.6
VIMP08670 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.79■□□□□ 0.6
VIMP08670 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.79■□□□□ 0.6
VIMP08670 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.79■□□□□ 0.6
VIMP08670 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.79■□□□□ 0.6
VIMP08670 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.79■□□□□ 0.6
VIMP08670 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.79■□□□□ 0.6
VIMP08670 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
VIMP08670 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
VIMP08670 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
VIMP08670 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.79■□□□□ 0.6
VIMP08670 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.79■□□□□ 0.6
VIMP08670 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.79■□□□□ 0.6
VIMP08670 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VIMP08670 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VIMP08670 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VIMP08670 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VIMP08670 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VIMP08670 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VIMP08670 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VIMP08670 AC084018.2-201ENST00000613093 2607 ntBASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms