Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A5A8TX70 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC14.5□□□□□ -0.09
COL6A5A8TX70 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC14.5□□□□□ -0.09
COL6A5A8TX70 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC14.5□□□□□ -0.09
COL6A5A8TX70 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A5A8TX70 TP73-AS1-210ENST00000637775 1455 ntBASIC14.5□□□□□ -0.09
COL6A5A8TX70 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A5A8TX70 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A5A8TX70 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A5A8TX70 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC14.5□□□□□ -0.09
COL6A5A8TX70 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A5A8TX70 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A5A8TX70 RAB17-203ENST00000409576 466 ntTSL 3 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 SIGLEC30P-201ENST00000455569 941 ntBASIC14.49□□□□□ -0.09
COL6A5A8TX70 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A5A8TX70 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A5A8TX70 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A5A8TX70 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A5A8TX70 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A5A8TX70 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A5A8TX70 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A5A8TX70 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A5A8TX70 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A5A8TX70 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A5A8TX70 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A5A8TX70 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 AC104417.2-201ENST00000562989 1793 ntBASIC14.49□□□□□ -0.09
COL6A5A8TX70 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL6A5A8TX70 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC14.49□□□□□ -0.09
COL6A5A8TX70 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A5A8TX70 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC14.48□□□□□ -0.09
COL6A5A8TX70 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A5A8TX70 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A5A8TX70 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A5A8TX70 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A5A8TX70 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC14.48□□□□□ -0.09
COL6A5A8TX70 KRT18P2-201ENST00000447938 1258 ntBASIC14.48□□□□□ -0.09
COL6A5A8TX70 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC14.48□□□□□ -0.09
COL6A5A8TX70 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC14.48□□□□□ -0.09
COL6A5A8TX70 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.48□□□□□ -0.09
COL6A5A8TX70 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.48□□□□□ -0.09
COL6A5A8TX70 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC14.48□□□□□ -0.09
COL6A5A8TX70 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
COL6A5A8TX70 AF106564.1-201ENST00000607058 2553 ntBASIC14.48□□□□□ -0.09
COL6A5A8TX70 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC14.48□□□□□ -0.09
COL6A5A8TX70 AC244015.2-201ENST00000616358 1861 ntBASIC14.48□□□□□ -0.09
COL6A5A8TX70 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A5A8TX70 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A5A8TX70 PON3-205ENST00000451904 1053 ntTSL 3 BASIC14.48□□□□□ -0.09
COL6A5A8TX70 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
COL6A5A8TX70 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A5A8TX70 AC005498.2-205ENST00000593218 784 ntBASIC14.48□□□□□ -0.09
COL6A5A8TX70 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC14.48□□□□□ -0.09
COL6A5A8TX70 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC14.48□□□□□ -0.09
COL6A5A8TX70 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A5A8TX70 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A5A8TX70 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A5A8TX70 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC14.48□□□□□ -0.09
COL6A5A8TX70 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A5A8TX70 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC14.47□□□□□ -0.09
COL6A5A8TX70 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
COL6A5A8TX70 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A5A8TX70 MED16-201ENST00000269814 1199 ntTSL 5 BASIC14.47□□□□□ -0.09
COL6A5A8TX70 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A5A8TX70 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC14.47□□□□□ -0.09
COL6A5A8TX70 AL359881.2-201ENST00000602973 570 ntBASIC14.47□□□□□ -0.09
COL6A5A8TX70 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.47□□□□□ -0.09
COL6A5A8TX70 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
COL6A5A8TX70 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC14.47□□□□□ -0.09
COL6A5A8TX70 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A5A8TX70 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC14.47□□□□□ -0.09
COL6A5A8TX70 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A5A8TX70 AL356309.3-201ENST00000624132 1934 ntBASIC14.47□□□□□ -0.09
COL6A5A8TX70 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
COL6A5A8TX70 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A5A8TX70 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC14.47□□□□□ -0.09
COL6A5A8TX70 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A5A8TX70 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A5A8TX70 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A5A8TX70 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
COL6A5A8TX70 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A5A8TX70 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A5A8TX70 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A5A8TX70 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms