Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 UBQLN4P1-201ENST00000461599 1801 ntBASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 AC069148.1-201ENST00000608741 768 ntBASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 AC112497.1-201ENST00000624824 639 ntBASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 DFFB-212ENST00000625756 649 ntTSL 5 BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 AC008556.1-201ENST00000610908 2040 ntBASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV40A0A0B4J280 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 AL136038.3-201ENST00000561909 1096 ntBASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 AL109659.2-201ENST00000606809 1674 ntBASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV40A0A0B4J280 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 AC120498.9-201ENST00000339021 3867 ntBASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 LY6E-213ENST00000522528 606 ntTSL 3 BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 HYMAI.1-201ENST00000620949 238 ntBASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 AC116407.4-201ENST00000623319 1061 ntBASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 FP475955.4-201ENST00000623131 1990 ntBASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV40A0A0B4J280 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms