Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
ZC3H4Q9UPT8 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
ZC3H4Q9UPT8 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
ZC3H4Q9UPT8 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
ZC3H4Q9UPT8 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
ZC3H4Q9UPT8 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC22.67■■□□□ 1.22
ZC3H4Q9UPT8 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 PPOX-214ENST00000535223 664 ntTSL 3 BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 MIR5100-201ENST00000579544 119 ntBASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
ZC3H4Q9UPT8 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 DNAJB3-201ENST00000446806 729 ntBASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 AC004967.1-201ENST00000453589 447 ntBASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 AC091607.1-201ENST00000490318 1060 ntBASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 CD63-204ENST00000546939 779 ntTSL 3 BASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC22.65■■□□□ 1.22
ZC3H4Q9UPT8 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 AC011840.4-201ENST00000578471 627 ntBASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 MIR3197-201ENST00000582241 73 ntBASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 AC010327.4-202ENST00000591484 748 ntBASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 AL355877.3-201ENST00000622820 899 ntBASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 AC116407.3-201ENST00000623905 1129 ntBASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
ZC3H4Q9UPT8 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
ZC3H4Q9UPT8 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC22.64■■□□□ 1.21
ZC3H4Q9UPT8 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC22.64■■□□□ 1.21
ZC3H4Q9UPT8 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
ZC3H4Q9UPT8 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC22.64■■□□□ 1.21
ZC3H4Q9UPT8 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
ZC3H4Q9UPT8 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC22.64■■□□□ 1.21
ZC3H4Q9UPT8 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
ZC3H4Q9UPT8 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 KRT89P-201ENST00000620027 1478 ntBASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 IMP4-203ENST00000409935 958 ntTSL 5 BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 RBM17P3-201ENST00000417687 1192 ntBASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 IGHV3-22-201ENST00000520721 359 ntBASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
ZC3H4Q9UPT8 PBK-203ENST00000522944 1499 ntTSL 2 BASIC22.62■■□□□ 1.21
ZC3H4Q9UPT8 MED15P5-201ENST00000423150 992 ntBASIC22.62■■□□□ 1.21
ZC3H4Q9UPT8 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC22.62■■□□□ 1.21
ZC3H4Q9UPT8 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms