Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CDX2Q99626 AL109659.2-201ENST00000606809 1674 ntBASIC19.58■□□□□ 0.72
CDX2Q99626 AP005117.1-201ENST00000584346 1413 ntBASIC19.58■□□□□ 0.72
CDX2Q99626 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.58■□□□□ 0.72
CDX2Q99626 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CDX2Q99626 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
CDX2Q99626 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.57■□□□□ 0.72
CDX2Q99626 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
CDX2Q99626 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CDX2Q99626 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.57■□□□□ 0.72
CDX2Q99626 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CDX2Q99626 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.57■□□□□ 0.72
CDX2Q99626 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC19.57■□□□□ 0.72
CDX2Q99626 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CDX2Q99626 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CDX2Q99626 GREM1-201ENST00000560677 623 ntTSL 4 BASIC19.57■□□□□ 0.72
CDX2Q99626 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.57■□□□□ 0.72
CDX2Q99626 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.57■□□□□ 0.72
CDX2Q99626 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.57■□□□□ 0.72
CDX2Q99626 AC025062.2-201ENST00000605477 670 ntBASIC19.57■□□□□ 0.72
CDX2Q99626 AC008556.1-201ENST00000610908 2040 ntBASIC19.57■□□□□ 0.72
CDX2Q99626 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.57■□□□□ 0.72
CDX2Q99626 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CDX2Q99626 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.57■□□□□ 0.72
CDX2Q99626 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CDX2Q99626 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.57■□□□□ 0.72
CDX2Q99626 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CDX2Q99626 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CDX2Q99626 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CDX2Q99626 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDX2Q99626 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CDX2Q99626 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.56■□□□□ 0.72
CDX2Q99626 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDX2Q99626 AP002414.3-201ENST00000589352 1468 ntBASIC19.56■□□□□ 0.72
CDX2Q99626 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
CDX2Q99626 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDX2Q99626 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CDX2Q99626 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.56■□□□□ 0.72
CDX2Q99626 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.56■□□□□ 0.72
CDX2Q99626 AC009947.1-201ENST00000444350 727 ntBASIC19.56■□□□□ 0.72
CDX2Q99626 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.56■□□□□ 0.72
CDX2Q99626 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.56■□□□□ 0.72
CDX2Q99626 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.56■□□□□ 0.72
CDX2Q99626 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC19.56■□□□□ 0.72
CDX2Q99626 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CDX2Q99626 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC19.56■□□□□ 0.72
CDX2Q99626 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.56■□□□□ 0.72
CDX2Q99626 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CDX2Q99626 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
CDX2Q99626 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CDX2Q99626 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.56■□□□□ 0.72
CDX2Q99626 FEM1AP4-201ENST00000443167 1987 ntBASIC19.55■□□□□ 0.72
CDX2Q99626 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CDX2Q99626 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.55■□□□□ 0.72
CDX2Q99626 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.55■□□□□ 0.72
CDX2Q99626 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CDX2Q99626 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CDX2Q99626 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CDX2Q99626 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CDX2Q99626 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.55■□□□□ 0.72
CDX2Q99626 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC19.55■□□□□ 0.72
CDX2Q99626 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.55■□□□□ 0.72
CDX2Q99626 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.55■□□□□ 0.72
CDX2Q99626 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CDX2Q99626 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CDX2Q99626 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CDX2Q99626 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC19.55■□□□□ 0.72
CDX2Q99626 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.55■□□□□ 0.72
CDX2Q99626 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.55■□□□□ 0.72
CDX2Q99626 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CDX2Q99626 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.54■□□□□ 0.72
CDX2Q99626 AP005212.1-201ENST00000581547 1997 ntBASIC19.54■□□□□ 0.72
CDX2Q99626 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
CDX2Q99626 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDX2Q99626 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.54■□□□□ 0.72
CDX2Q99626 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC19.54■□□□□ 0.72
CDX2Q99626 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC19.54■□□□□ 0.72
CDX2Q99626 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.54■□□□□ 0.72
CDX2Q99626 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.54■□□□□ 0.72
CDX2Q99626 ALG1L5P-201ENST00000482043 771 ntBASIC19.54■□□□□ 0.72
CDX2Q99626 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.54■□□□□ 0.72
CDX2Q99626 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.54■□□□□ 0.72
CDX2Q99626 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.54■□□□□ 0.72
CDX2Q99626 AC138761.1-201ENST00000584393 385 ntBASIC19.54■□□□□ 0.72
CDX2Q99626 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CDX2Q99626 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDX2Q99626 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDX2Q99626 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDX2Q99626 AL356309.3-201ENST00000624132 1934 ntBASIC19.54■□□□□ 0.72
CDX2Q99626 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CDX2Q99626 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CDX2Q99626 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC19.53■□□□□ 0.72
CDX2Q99626 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.53■□□□□ 0.72
CDX2Q99626 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CDX2Q99626 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CDX2Q99626 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CDX2Q99626 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDX2Q99626 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDX2Q99626 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.53■□□□□ 0.72
CDX2Q99626 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms