Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 RAB17-203ENST00000409576 466 ntTSL 3 BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 COQ9-214ENST00000567933 882 ntTSL 3 BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
UBR4Q5T4S7 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 AC234644.1-201ENST00000406065 370 ntBASIC10.22□□□□□ -0.77
UBR4Q5T4S7 KRT18P27-201ENST00000427733 1299 ntBASIC10.22□□□□□ -0.77
UBR4Q5T4S7 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 AL513210.1-201ENST00000629608 234 ntBASIC10.22□□□□□ -0.77
UBR4Q5T4S7 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 CRB3P1-201ENST00000449338 276 ntBASIC10.22□□□□□ -0.77
UBR4Q5T4S7 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 AC092933.1-201ENST00000393644 945 ntBASIC10.22□□□□□ -0.77
UBR4Q5T4S7 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 AC051619.7-201ENST00000568314 623 ntBASIC10.22□□□□□ -0.77
UBR4Q5T4S7 AC027307.3-201ENST00000594262 1100 ntBASIC10.22□□□□□ -0.77
UBR4Q5T4S7 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 MIR943-201ENST00000401286 94 ntBASIC10.22□□□□□ -0.77
UBR4Q5T4S7 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 RN7SL692P-201ENST00000464677 288 ntBASIC10.22□□□□□ -0.77
UBR4Q5T4S7 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 GUSBP12-201ENST00000513727 720 ntBASIC10.22□□□□□ -0.77
UBR4Q5T4S7 AC021087.4-201ENST00000563761 564 ntBASIC10.22□□□□□ -0.77
UBR4Q5T4S7 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
UBR4Q5T4S7 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 TP73-AS1-210ENST00000637775 1455 ntBASIC10.21□□□□□ -0.77
UBR4Q5T4S7 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
UBR4Q5T4S7 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
UBR4Q5T4S7 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
UBR4Q5T4S7 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC10.21□□□□□ -0.78
UBR4Q5T4S7 INIP-202ENST00000374236 874 ntTSL 2 BASIC10.21□□□□□ -0.78
UBR4Q5T4S7 BASP1P1-201ENST00000430708 665 ntBASIC10.21□□□□□ -0.78
UBR4Q5T4S7 AC055876.3-201ENST00000431496 288 ntBASIC10.21□□□□□ -0.78
UBR4Q5T4S7 TPI1-206ENST00000488464 791 ntTSL 5 BASIC10.21□□□□□ -0.78
UBR4Q5T4S7 AC138649.4-201ENST00000612222 287 ntBASIC10.21□□□□□ -0.78
UBR4Q5T4S7 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
UBR4Q5T4S7 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC10.21□□□□□ -0.78
UBR4Q5T4S7 AC004817.3-201ENST00000602957 2129 ntBASIC10.21□□□□□ -0.78
UBR4Q5T4S7 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
UBR4Q5T4S7 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC10.21□□□□□ -0.78
UBR4Q5T4S7 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
UBR4Q5T4S7 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.78
UBR4Q5T4S7 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
UBR4Q5T4S7 AL160286.2-201ENST00000567150 934 ntBASIC10.21□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms