Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP39Q53GS9 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.03■□□□□ 0.64
USP39Q53GS9 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP39Q53GS9 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP39Q53GS9 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP39Q53GS9 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.03■□□□□ 0.64
USP39Q53GS9 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP39Q53GS9 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP39Q53GS9 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP39Q53GS9 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.03■□□□□ 0.64
USP39Q53GS9 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.03■□□□□ 0.64
USP39Q53GS9 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP39Q53GS9 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP39Q53GS9 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.03■□□□□ 0.64
USP39Q53GS9 SPDYE13P-201ENST00000445314 798 ntBASIC19.03■□□□□ 0.64
USP39Q53GS9 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.03■□□□□ 0.64
USP39Q53GS9 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.03■□□□□ 0.64
USP39Q53GS9 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.03■□□□□ 0.64
USP39Q53GS9 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.03■□□□□ 0.64
USP39Q53GS9 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP39Q53GS9 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP39Q53GS9 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP39Q53GS9 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.03■□□□□ 0.64
USP39Q53GS9 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.03■□□□□ 0.64
USP39Q53GS9 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.03■□□□□ 0.64
USP39Q53GS9 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP39Q53GS9 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.03■□□□□ 0.64
USP39Q53GS9 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP39Q53GS9 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP39Q53GS9 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
USP39Q53GS9 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.64
USP39Q53GS9 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP39Q53GS9 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP39Q53GS9 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
USP39Q53GS9 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP39Q53GS9 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.02■□□□□ 0.64
USP39Q53GS9 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP39Q53GS9 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP39Q53GS9 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP39Q53GS9 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP39Q53GS9 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
USP39Q53GS9 BX276092.5-203ENST00000456199 560 ntBASIC19.02■□□□□ 0.64
USP39Q53GS9 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.02■□□□□ 0.64
USP39Q53GS9 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP39Q53GS9 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.02■□□□□ 0.64
USP39Q53GS9 AL121672.3-201ENST00000608644 468 ntBASIC19.02■□□□□ 0.64
USP39Q53GS9 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP39Q53GS9 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
USP39Q53GS9 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.02■□□□□ 0.63
USP39Q53GS9 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
USP39Q53GS9 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP39Q53GS9 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
USP39Q53GS9 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP39Q53GS9 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
USP39Q53GS9 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
USP39Q53GS9 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP39Q53GS9 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP39Q53GS9 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.01■□□□□ 0.63
USP39Q53GS9 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP39Q53GS9 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP39Q53GS9 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
USP39Q53GS9 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP39Q53GS9 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.01■□□□□ 0.63
USP39Q53GS9 TSSC2-201ENST00000450217 709 ntBASIC19.01■□□□□ 0.63
USP39Q53GS9 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.01■□□□□ 0.63
USP39Q53GS9 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP39Q53GS9 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP39Q53GS9 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
USP39Q53GS9 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP39Q53GS9 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.01■□□□□ 0.63
USP39Q53GS9 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP39Q53GS9 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
USP39Q53GS9 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP39Q53GS9 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP39Q53GS9 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.01■□□□□ 0.63
USP39Q53GS9 AC093484.2-201ENST00000580996 2166 ntBASIC19■□□□□ 0.63
USP39Q53GS9 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19■□□□□ 0.63
USP39Q53GS9 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
USP39Q53GS9 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
USP39Q53GS9 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP39Q53GS9 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19■□□□□ 0.63
USP39Q53GS9 AC005332.7-201ENST00000614046 2005 ntBASIC19■□□□□ 0.63
USP39Q53GS9 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP39Q53GS9 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP39Q53GS9 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP39Q53GS9 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP39Q53GS9 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19■□□□□ 0.63
USP39Q53GS9 AC092597.1-201ENST00000487352 616 ntBASIC19■□□□□ 0.63
USP39Q53GS9 AC011498.5-201ENST00000592027 486 ntBASIC19■□□□□ 0.63
USP39Q53GS9 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP39Q53GS9 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
USP39Q53GS9 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP39Q53GS9 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP39Q53GS9 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP39Q53GS9 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP39Q53GS9 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
USP39Q53GS9 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
USP39Q53GS9 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP39Q53GS9 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19■□□□□ 0.63
USP39Q53GS9 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms