Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
PTCHD3Q3KNS1 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.33■□□□□ 0.53
PTCHD3Q3KNS1 KRT8P3-201ENST00000519669 1449 ntBASIC18.33■□□□□ 0.53
PTCHD3Q3KNS1 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
PTCHD3Q3KNS1 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
PTCHD3Q3KNS1 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
PTCHD3Q3KNS1 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
PTCHD3Q3KNS1 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
PTCHD3Q3KNS1 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
PTCHD3Q3KNS1 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 C2orf69P3-201ENST00000565542 1120 ntBASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 AP005242.2-201ENST00000580065 1175 ntBASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.33■□□□□ 0.52
PTCHD3Q3KNS1 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 AC096733.2-201ENST00000609937 1394 ntBASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 KRT18P57-201ENST00000443599 1254 ntBASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.32■□□□□ 0.52
PTCHD3Q3KNS1 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 AC113347.1-201ENST00000413321 391 ntBASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 HEIH-201ENST00000623091 1652 ntBASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD3Q3KNS1 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 MFAP1P1-201ENST00000442257 1255 ntBASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 SLC25A3P1-201ENST00000443844 931 ntBASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 KRT8P32-201ENST00000512863 1461 ntBASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 AC020763.4-201ENST00000623414 4170 ntBASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD3Q3KNS1 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms