Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
MSH6P52701 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC25.93■■□□□ 1.74
MSH6P52701 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC25.93■■□□□ 1.74
MSH6P52701 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
MSH6P52701 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC25.93■■□□□ 1.74
MSH6P52701 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC25.93■■□□□ 1.74
MSH6P52701 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
MSH6P52701 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
MSH6P52701 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC25.93■■□□□ 1.74
MSH6P52701 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC25.93■■□□□ 1.74
MSH6P52701 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC25.93■■□□□ 1.74
MSH6P52701 AC004967.1-201ENST00000453589 447 ntBASIC25.93■■□□□ 1.74
MSH6P52701 AC132008.2-207ENST00000454517 770 ntBASIC25.93■■□□□ 1.74
MSH6P52701 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC25.93■■□□□ 1.74
MSH6P52701 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC25.93■■□□□ 1.74
MSH6P52701 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
MSH6P52701 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
MSH6P52701 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
MSH6P52701 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
MSH6P52701 AC008556.1-201ENST00000610908 2040 ntBASIC25.92■■□□□ 1.74
MSH6P52701 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
MSH6P52701 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
MSH6P52701 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
MSH6P52701 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC25.92■■□□□ 1.74
MSH6P52701 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC25.92■■□□□ 1.74
MSH6P52701 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC25.92■■□□□ 1.74
MSH6P52701 CSF3-203ENST00000394148 622 ntTSL 3 BASIC25.92■■□□□ 1.74
MSH6P52701 RPS8P6-201ENST00000426177 609 ntBASIC25.92■■□□□ 1.74
MSH6P52701 THAP5-204ENST00000438865 868 ntTSL 2 BASIC25.92■■□□□ 1.74
MSH6P52701 NMU-202ENST00000505262 693 ntTSL 3 BASIC25.92■■□□□ 1.74
MSH6P52701 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
MSH6P52701 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC25.92■■□□□ 1.74
MSH6P52701 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
MSH6P52701 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC25.92■■□□□ 1.74
MSH6P52701 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC25.92■■□□□ 1.74
MSH6P52701 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
MSH6P52701 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
MSH6P52701 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC25.91■■□□□ 1.74
MSH6P52701 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
MSH6P52701 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
MSH6P52701 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
MSH6P52701 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
MSH6P52701 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC25.91■■□□□ 1.74
MSH6P52701 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
MSH6P52701 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC25.91■■□□□ 1.74
MSH6P52701 AL591424.1-201ENST00000442569 1213 ntBASIC25.91■■□□□ 1.74
MSH6P52701 CD63-204ENST00000546939 779 ntTSL 3 BASIC25.91■■□□□ 1.74
MSH6P52701 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC25.91■■□□□ 1.74
MSH6P52701 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
MSH6P52701 AC083906.6-201ENST00000641366 219 ntBASIC25.91■■□□□ 1.74
MSH6P52701 AC079781.4-201ENST00000641908 219 ntBASIC25.91■■□□□ 1.74
MSH6P52701 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
MSH6P52701 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
MSH6P52701 KRT89P-201ENST00000620027 1478 ntBASIC25.91■■□□□ 1.74
MSH6P52701 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
MSH6P52701 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
MSH6P52701 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC25.91■■□□□ 1.74
MSH6P52701 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
MSH6P52701 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH6P52701 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC25.9■■□□□ 1.74
MSH6P52701 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH6P52701 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH6P52701 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH6P52701 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH6P52701 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
MSH6P52701 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH6P52701 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC25.9■■□□□ 1.74
MSH6P52701 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC25.9■■□□□ 1.74
MSH6P52701 RPS2P28-201ENST00000314255 741 ntBASIC25.9■■□□□ 1.74
MSH6P52701 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH6P52701 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH6P52701 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC25.9■■□□□ 1.74
MSH6P52701 DHDH-204ENST00000523250 634 ntTSL 5 BASIC25.9■■□□□ 1.74
MSH6P52701 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC25.9■■□□□ 1.74
MSH6P52701 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC25.9■■□□□ 1.74
MSH6P52701 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC25.9■■□□□ 1.74
MSH6P52701 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH6P52701 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH6P52701 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH6P52701 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC25.89■■□□□ 1.74
MSH6P52701 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
MSH6P52701 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
MSH6P52701 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
MSH6P52701 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
MSH6P52701 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC25.89■■□□□ 1.74
MSH6P52701 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC25.89■■□□□ 1.74
MSH6P52701 YBX2P1-201ENST00000394192 760 ntBASIC25.89■■□□□ 1.74
MSH6P52701 RBM17P3-201ENST00000417687 1192 ntBASIC25.89■■□□□ 1.74
MSH6P52701 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
MSH6P52701 FIS1-203ENST00000442303 631 ntTSL 3 BASIC25.89■■□□□ 1.74
MSH6P52701 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC25.89■■□□□ 1.74
MSH6P52701 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC25.89■■□□□ 1.74
MSH6P52701 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC25.89■■□□□ 1.74
MSH6P52701 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.73
MSH6P52701 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
MSH6P52701 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC25.88■■□□□ 1.73
MSH6P52701 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
MSH6P52701 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
MSH6P52701 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC25.88■■□□□ 1.73
MSH6P52701 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC25.88■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms