Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFX3P48380 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
RFX3P48380 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.64■□□□□ 0.41
RFX3P48380 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX3P48380 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX3P48380 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX3P48380 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX3P48380 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX3P48380 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RFX3P48380 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX3P48380 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
RFX3P48380 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX3P48380 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.63■□□□□ 0.41
RFX3P48380 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX3P48380 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX3P48380 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
RFX3P48380 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.63■□□□□ 0.41
RFX3P48380 TSPY7P-201ENST00000431358 1114 ntBASIC17.63■□□□□ 0.41
RFX3P48380 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX3P48380 AC011506.1-201ENST00000474329 610 ntBASIC17.63■□□□□ 0.41
RFX3P48380 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.63■□□□□ 0.41
RFX3P48380 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.63■□□□□ 0.41
RFX3P48380 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
RFX3P48380 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX3P48380 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX3P48380 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX3P48380 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.63■□□□□ 0.41
RFX3P48380 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.63■□□□□ 0.41
RFX3P48380 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX3P48380 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.63■□□□□ 0.41
RFX3P48380 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX3P48380 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
RFX3P48380 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.62■□□□□ 0.41
RFX3P48380 FEM1AP3-201ENST00000403722 1741 ntBASIC17.62■□□□□ 0.41
RFX3P48380 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
RFX3P48380 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.62■□□□□ 0.41
RFX3P48380 FAM207BP-201ENST00000447172 505 ntBASIC17.62■□□□□ 0.41
RFX3P48380 B3GAT3P1-201ENST00000471720 806 ntBASIC17.62■□□□□ 0.41
RFX3P48380 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.62■□□□□ 0.41
RFX3P48380 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 AC026271.3-201ENST00000571884 352 ntBASIC17.62■□□□□ 0.41
RFX3P48380 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.62■□□□□ 0.41
RFX3P48380 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
RFX3P48380 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.62■□□□□ 0.41
RFX3P48380 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 KRT8P11-201ENST00000409686 1436 ntBASIC17.62■□□□□ 0.41
RFX3P48380 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.62■□□□□ 0.41
RFX3P48380 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
RFX3P48380 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFX3P48380 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.62■□□□□ 0.41
RFX3P48380 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.62■□□□□ 0.41
RFX3P48380 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.61■□□□□ 0.41
RFX3P48380 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.61■□□□□ 0.41
RFX3P48380 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
RFX3P48380 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
RFX3P48380 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.61■□□□□ 0.41
RFX3P48380 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
RFX3P48380 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
RFX3P48380 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.61■□□□□ 0.41
RFX3P48380 SNORA78-201ENST00000459373 127 ntBASIC17.61■□□□□ 0.41
RFX3P48380 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.61■□□□□ 0.41
RFX3P48380 AC026471.5-201ENST00000615068 467 ntBASIC17.61■□□□□ 0.41
RFX3P48380 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
RFX3P48380 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.61■□□□□ 0.41
RFX3P48380 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
RFX3P48380 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX3P48380 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
RFX3P48380 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms