Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCANP13611 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCANP13611 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
VCANP13611 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.38■□□□□ 0.69
VCANP13611 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
VCANP13611 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
VCANP13611 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
VCANP13611 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCANP13611 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.38■□□□□ 0.69
VCANP13611 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCANP13611 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
VCANP13611 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VCANP13611 NUS1P2-201ENST00000417358 873 ntBASIC19.38■□□□□ 0.69
VCANP13611 RNA5SP415-201ENST00000517246 115 ntBASIC19.38■□□□□ 0.69
VCANP13611 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.38■□□□□ 0.69
VCANP13611 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.38■□□□□ 0.69
VCANP13611 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VCANP13611 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
VCANP13611 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VCANP13611 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.37■□□□□ 0.69
VCANP13611 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCANP13611 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCANP13611 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
VCANP13611 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCANP13611 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCANP13611 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCANP13611 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.37■□□□□ 0.69
VCANP13611 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCANP13611 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCANP13611 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC19.37■□□□□ 0.69
VCANP13611 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.37■□□□□ 0.69
VCANP13611 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC19.37■□□□□ 0.69
VCANP13611 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCANP13611 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCANP13611 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCANP13611 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCANP13611 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
VCANP13611 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.37■□□□□ 0.69
VCANP13611 AC015922.1-201ENST00000421102 1152 ntBASIC19.37■□□□□ 0.69
VCANP13611 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC19.37■□□□□ 0.69
VCANP13611 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.37■□□□□ 0.69
VCANP13611 AC025062.2-201ENST00000605477 670 ntBASIC19.37■□□□□ 0.69
VCANP13611 AC124864.1-201ENST00000623408 392 ntBASIC19.37■□□□□ 0.69
VCANP13611 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCANP13611 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.37■□□□□ 0.69
VCANP13611 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
VCANP13611 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC19.36■□□□□ 0.69
VCANP13611 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCANP13611 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC19.36■□□□□ 0.69
VCANP13611 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.36■□□□□ 0.69
VCANP13611 AF228730.6-201ENST00000641497 218 ntBASIC19.36■□□□□ 0.69
VCANP13611 AC084121.3-201ENST00000641716 218 ntBASIC19.36■□□□□ 0.69
VCANP13611 AC105233.6-201ENST00000642093 218 ntBASIC19.36■□□□□ 0.69
VCANP13611 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCANP13611 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.36■□□□□ 0.69
VCANP13611 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCANP13611 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCANP13611 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCANP13611 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCANP13611 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCANP13611 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.36■□□□□ 0.69
VCANP13611 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.36■□□□□ 0.69
VCANP13611 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCANP13611 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.36■□□□□ 0.69
VCANP13611 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC19.36■□□□□ 0.69
VCANP13611 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.36■□□□□ 0.69
VCANP13611 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
VCANP13611 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VCANP13611 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCANP13611 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VCANP13611 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCANP13611 AC007967.2-201ENST00000432613 625 ntBASIC19.36■□□□□ 0.69
VCANP13611 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC19.36■□□□□ 0.69
VCANP13611 MIR4745-201ENST00000577608 62 ntBASIC19.36■□□□□ 0.69
VCANP13611 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
VCANP13611 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.36■□□□□ 0.69
VCANP13611 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.36■□□□□ 0.69
VCANP13611 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.36■□□□□ 0.69
VCANP13611 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
VCANP13611 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.35■□□□□ 0.69
VCANP13611 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.35■□□□□ 0.69
VCANP13611 AC254562.1-201ENST00000417586 456 ntBASIC19.35■□□□□ 0.69
VCANP13611 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.35■□□□□ 0.69
VCANP13611 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VCANP13611 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.35■□□□□ 0.69
VCANP13611 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
VCANP13611 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.35■□□□□ 0.69
VCANP13611 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.35■□□□□ 0.69
VCANP13611 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VCANP13611 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCANP13611 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.35■□□□□ 0.69
VCANP13611 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.35■□□□□ 0.69
VCANP13611 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.35■□□□□ 0.69
VCANP13611 AL162377.1-201ENST00000618844 1793 ntBASIC19.35■□□□□ 0.69
VCANP13611 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCANP13611 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCANP13611 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
VCANP13611 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC19.35■□□□□ 0.69
VCANP13611 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCANP13611 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms