Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 PENK-208ENST00000523051 772 ntTSL 5 BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 BX640515.1-201ENST00000617215 977 ntBASIC32.48■■■□□ 2.79
CCDC88BA6NC98 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 TEX30-205ENST00000376029 959 ntTSL 2 BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 GPALPP1-207ENST00000611650 899 ntBASIC32.48■■■□□ 2.79
CCDC88BA6NC98 NME4-212ENST00000621774 904 ntTSL 3 BASIC32.48■■■□□ 2.79
CCDC88BA6NC98 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 EMD-201ENST00000369835 966 ntTSL 3 BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
CCDC88BA6NC98 AL353692.3-201ENST00000407031 1396 ntBASIC32.46■■■□□ 2.79
CCDC88BA6NC98 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC32.46■■■□□ 2.79
CCDC88BA6NC98 Z98044.1-201ENST00000632503 1764 ntBASIC32.46■■■□□ 2.79
CCDC88BA6NC98 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
CCDC88BA6NC98 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC32.46■■■□□ 2.79
CCDC88BA6NC98 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC32.46■■■□□ 2.79
CCDC88BA6NC98 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
CCDC88BA6NC98 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
CCDC88BA6NC98 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC32.46■■■□□ 2.79
CCDC88BA6NC98 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
CCDC88BA6NC98 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC32.46■■■□□ 2.79
CCDC88BA6NC98 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC32.46■■■□□ 2.79
CCDC88BA6NC98 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC32.46■■■□□ 2.79
CCDC88BA6NC98 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC32.46■■■□□ 2.79
CCDC88BA6NC98 FP475955.4-201ENST00000623131 1990 ntBASIC32.46■■■□□ 2.79
CCDC88BA6NC98 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
CCDC88BA6NC98 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC32.45■■■□□ 2.79
CCDC88BA6NC98 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
CCDC88BA6NC98 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC32.45■■■□□ 2.79
CCDC88BA6NC98 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC32.45■■■□□ 2.79
CCDC88BA6NC98 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
CCDC88BA6NC98 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC32.45■■■□□ 2.79
CCDC88BA6NC98 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC32.45■■■□□ 2.79
CCDC88BA6NC98 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC32.45■■■□□ 2.79
CCDC88BA6NC98 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
CCDC88BA6NC98 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
CCDC88BA6NC98 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC32.45■■■□□ 2.79
CCDC88BA6NC98 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC32.45■■■□□ 2.79
CCDC88BA6NC98 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC32.45■■■□□ 2.79
CCDC88BA6NC98 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC32.45■■■□□ 2.79
CCDC88BA6NC98 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC32.45■■■□□ 2.79
CCDC88BA6NC98 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC32.44■■■□□ 2.78
CCDC88BA6NC98 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC32.44■■■□□ 2.78
CCDC88BA6NC98 AC141586.3-201ENST00000562166 1838 ntBASIC32.44■■■□□ 2.78
CCDC88BA6NC98 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC32.44■■■□□ 2.78
CCDC88BA6NC98 AC079776.4-201ENST00000511039 504 ntBASIC32.44■■■□□ 2.78
CCDC88BA6NC98 LINC01711-201ENST00000598340 967 ntBASIC32.44■■■□□ 2.78
CCDC88BA6NC98 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
CCDC88BA6NC98 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC32.44■■■□□ 2.78
CCDC88BA6NC98 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
CCDC88BA6NC98 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
CCDC88BA6NC98 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
CCDC88BA6NC98 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
CCDC88BA6NC98 AL357033.4-201ENST00000617703 1807 ntBASIC32.44■■■□□ 2.78
CCDC88BA6NC98 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
CCDC88BA6NC98 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC32.44■■■□□ 2.78
CCDC88BA6NC98 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC32.44■■■□□ 2.78
CCDC88BA6NC98 MTMR9LP-203ENST00000426597 1545 ntBASIC32.43■■■□□ 2.78
CCDC88BA6NC98 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
CCDC88BA6NC98 HES2-202ENST00000377836 507 ntTSL 2 BASIC32.43■■■□□ 2.78
CCDC88BA6NC98 GUSBP12-201ENST00000513727 720 ntBASIC32.43■■■□□ 2.78
CCDC88BA6NC98 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC32.43■■■□□ 2.78
CCDC88BA6NC98 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC32.43■■■□□ 2.78
CCDC88BA6NC98 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
CCDC88BA6NC98 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
CCDC88BA6NC98 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC32.43■■■□□ 2.78
CCDC88BA6NC98 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC32.43■■■□□ 2.78
CCDC88BA6NC98 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
CCDC88BA6NC98 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC32.42■■■□□ 2.78
CCDC88BA6NC98 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC32.42■■■□□ 2.78
CCDC88BA6NC98 ABR-217ENST00000572441 563 ntTSL 4 BASIC32.42■■■□□ 2.78
CCDC88BA6NC98 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms