Protein–RNA interactions for Protein: O70209

Pdlim3, PDZ and LIM domain protein 3, mousemouse

Known RBP Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim3O70209 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Pdlim3O70209 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
Pdlim3O70209 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.77■□□□□ 0.92
Pdlim3O70209 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Pdlim3O70209 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Pdlim3O70209 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Pdlim3O70209 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Pdlim3O70209 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Pdlim3O70209 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Pdlim3O70209 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pdlim3O70209 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.74■□□□□ 0.91
Pdlim3O70209 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Pdlim3O70209 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Pdlim3O70209 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Pdlim3O70209 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pdlim3O70209 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pdlim3O70209 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Pdlim3O70209 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pdlim3O70209 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Pdlim3O70209 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pdlim3O70209 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pdlim3O70209 Tdp2-203ENSMUST00000223804 1136 ntBASIC20.72■□□□□ 0.91
Pdlim3O70209 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pdlim3O70209 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
Pdlim3O70209 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pdlim3O70209 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pdlim3O70209 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pdlim3O70209 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pdlim3O70209 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC20.71■□□□□ 0.91
Pdlim3O70209 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pdlim3O70209 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Pdlim3O70209 Gm17641-201ENSMUST00000166328 2350 ntBASIC20.71■□□□□ 0.91
Pdlim3O70209 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.91
Pdlim3O70209 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pdlim3O70209 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pdlim3O70209 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Pdlim3O70209 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC20.7■□□□□ 0.9
Pdlim3O70209 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Pdlim3O70209 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Pdlim3O70209 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Pdlim3O70209 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pdlim3O70209 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.69■□□□□ 0.9
Pdlim3O70209 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pdlim3O70209 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Pdlim3O70209 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pdlim3O70209 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Pdlim3O70209 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pdlim3O70209 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Pdlim3O70209 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pdlim3O70209 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC20.67■□□□□ 0.9
Pdlim3O70209 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Pdlim3O70209 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Pdlim3O70209 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pdlim3O70209 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pdlim3O70209 Gm14121-201ENSMUST00000121441 1380 ntBASIC20.66■□□□□ 0.9
Pdlim3O70209 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Pdlim3O70209 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Pdlim3O70209 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Pdlim3O70209 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.65■□□□□ 0.9
Pdlim3O70209 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Pdlim3O70209 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Pdlim3O70209 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC20.64■□□□□ 0.89
Pdlim3O70209 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Pdlim3O70209 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Pdlim3O70209 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Pdlim3O70209 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Pdlim3O70209 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Pdlim3O70209 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Pdlim3O70209 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Pdlim3O70209 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Pdlim3O70209 Gm45855-201ENSMUST00000212546 880 ntBASIC20.62■□□□□ 0.89
Pdlim3O70209 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC20.61■□□□□ 0.89
Pdlim3O70209 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Pdlim3O70209 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Pdlim3O70209 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Pdlim3O70209 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Pdlim3O70209 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Pdlim3O70209 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Pdlim3O70209 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Pdlim3O70209 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Pdlim3O70209 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Pdlim3O70209 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Pdlim3O70209 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Pdlim3O70209 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Pdlim3O70209 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Pdlim3O70209 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Pdlim3O70209 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Pdlim3O70209 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Pdlim3O70209 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Pdlim3O70209 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
Pdlim3O70209 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
Pdlim3O70209 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Pdlim3O70209 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Pdlim3O70209 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Pdlim3O70209 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Pdlim3O70209 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Pdlim3O70209 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pdlim3O70209 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
Pdlim3O70209 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Pdlim3O70209 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 15.1 ms