RNA–Protein interactions for RNA: ENST00000624953.1

CDKL5-208, Transcript of cyclin dependent kinase like 5, humanhuman

TSL 4

Gene CDKL5, Length 567 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-208ENST00000624953 AEBP2Q6ZN18 517 aaPredicted RBP18.68■□□□□ 0.58
CDKL5-208ENST00000624953 CHIC1Q5VXU3 224 aa17.53■□□□□ 0.4
CDKL5-208ENST00000624953 SENP3Q9H4L4 574 aaPredicted RBP15.78■□□□□ 0.12
CDKL5-208ENST00000624953 PHF23Q9BUL5 403 aaPredicted RBP15.65■□□□□ 0.1
CDKL5-208ENST00000624953 FOXD1Q16676 465 aa14.84□□□□□ -0.03
CDKL5-208ENST00000624953 PLPPR3Q6T4P5 718 aa14.04□□□□□ -0.16
CDKL5-208ENST00000624953 PPP6R1Q9UPN7 881 aa13.86□□□□□ -0.19
CDKL5-208ENST00000624953 PIAS4Q8N2W9 510 aaPredicted RBP13.81□□□□□ -0.2
CDKL5-208ENST00000624953 MSH5O43196 834 aa13.79□□□□□ -0.2
CDKL5-208ENST00000624953 ADRA2BP18089 450 aa13.79□□□□□ -0.2
CDKL5-208ENST00000624953 POTEDQ86YR6 584 aa13.77□□□□□ -0.21
CDKL5-208ENST00000624953 MAPK8IP2Q13387 824 aaPredicted RBP12.73□□□□□ -0.37
CDKL5-208ENST00000624953 DMRT2Q9Y5R5 561 aa12.53□□□□□ -0.4
CDKL5-208ENST00000624953 SCAF1Q9H7N4 1312 aaKnown RBP12.41□□□□□ -0.42
CDKL5-208ENST00000624953 PPP4R3CPQ6ZMV5 832 aa12.36□□□□□ -0.43
CDKL5-208ENST00000624953 DCAF8L1A6NGE4 600 aa12.08□□□□□ -0.48
CDKL5-208ENST00000624953 KCNA4P22459 653 aa12.04□□□□□ -0.48
CDKL5-208ENST00000624953 CNKSR2Q8WXI2 1034 aa12.04□□□□□ -0.48
CDKL5-208ENST00000624953 HOXD11P31277 338 aaPredicted RBP12.03□□□□□ -0.48
CDKL5-208ENST00000624953 CACNB1Q02641 598 aaPredicted RBP11.97□□□□□ -0.49
CDKL5-208ENST00000624953 NCBP3Q53F19 620 aaKnown RBP11.96□□□□□ -0.49
CDKL5-208ENST00000624953 NPM3O75607 178 aaKnown RBP11.89□□□□□ -0.51
CDKL5-208ENST00000624953 RNF216Q9NWF9 866 aaPredicted RBP11.89□□□□□ -0.51
CDKL5-208ENST00000624953 RNF39Q9H2S5 420 aa11.82□□□□□ -0.52
CDKL5-208ENST00000624953 DNAJC5BQ9UF47 199 aa11.8□□□□□ -0.52
CDKL5-208ENST00000624953 C1QBPQ07021 282 aaKnown RBP11.57□□□□□ -0.56
CDKL5-208ENST00000624953 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.46□□□□□ -0.57
CDKL5-208ENST00000624953 SLC4A1APQ9BWU0 796 aaKnown RBP11.39□□□□□ -0.59
CDKL5-208ENST00000624953 SLC4A2P04920 1241 aa11.29□□□□□ -0.6
CDKL5-208ENST00000624953 U3KPZ7 1027 aaPredicted RBP11.27□□□□□ -0.61
CDKL5-208ENST00000624953 SPINK5Q9NQ38 1064 aaPredicted RBP11.18□□□□□ -0.62
CDKL5-208ENST00000624953 ZBTB22O15209 634 aa11.15□□□□□ -0.62
CDKL5-208ENST00000624953 CAPN15O75808 1086 aa11.1□□□□□ -0.63
CDKL5-208ENST00000624953 FOXD4L1Q9NU39 408 aa11.09□□□□□ -0.63
CDKL5-208ENST00000624953 DSG3P32926 999 aa11.07□□□□□ -0.64
CDKL5-208ENST00000624953 CSRNP3Q8WYN3 585 aa11.02□□□□□ -0.65
CDKL5-208ENST00000624953 MYCNP04198 464 aaPredicted RBP10.95□□□□□ -0.66
CDKL5-208ENST00000624953 TRHP20396 242 aaPredicted RBP10.93□□□□□ -0.66
CDKL5-208ENST00000624953 EHMT2Q96KQ7 1210 aa10.92□□□□□ -0.66
CDKL5-208ENST00000624953 ABCB7O75027 752 aa10.91□□□□□ -0.66
CDKL5-208ENST00000624953 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.82□□□□□ -0.68
CDKL5-208ENST00000624953 HNRNPUL2Q1KMD3 747 aaKnown RBP10.82□□□□□ -0.68
CDKL5-208ENST00000624953 SAMD1Q6SPF0 538 aaPredicted RBP10.8□□□□□ -0.68
CDKL5-208ENST00000624953 ZNF219Q9P2Y4 722 aaPredicted RBP10.78□□□□□ -0.68
CDKL5-208ENST00000624953 ATXN8OSP0DMR3 200 aa10.77□□□□□ -0.69
CDKL5-208ENST00000624953 POTEHQ6S545 545 aa10.74□□□□□ -0.69
CDKL5-208ENST00000624953 APLP2Q06481 763 aa10.73□□□□□ -0.69
CDKL5-208ENST00000624953 ATF5Q9Y2D1 282 aaPredicted RBP10.69□□□□□ -0.7
CDKL5-208ENST00000624953 POLA2Q14181 598 aa10.59□□□□□ -0.71
CDKL5-208ENST00000624953 RBM42Q9BTD8 480 aaKnown RBP10.44□□□□□ -0.74
CDKL5-208ENST00000624953 CHRDL2Q6WN34 429 aa10.34□□□□□ -0.75
CDKL5-208ENST00000624953 MKRN4PQ13434 485 aaPredicted RBP10.28□□□□□ -0.76
CDKL5-208ENST00000624953 OSCARQ8IYS5 282 aa10.28□□□□□ -0.76
CDKL5-208ENST00000624953 ZBTB12Q9Y330 459 aaPredicted RBP10.23□□□□□ -0.77
CDKL5-208ENST00000624953 AKT1S1Q96B36 256 aa10.21□□□□□ -0.77
CDKL5-208ENST00000624953 REM2Q8IYK8 340 aaPredicted RBP10.19□□□□□ -0.78
CDKL5-208ENST00000624953 PITPNM1O00562 1244 aa10.11□□□□□ -0.79
CDKL5-208ENST00000624953 FBLN2P98095 1184 aa10.11□□□□□ -0.79
CDKL5-208ENST00000624953 PIP4P2Q8N4L2 257 aa10.11□□□□□ -0.79
CDKL5-208ENST00000624953 FXR2P51116 673 aaKnown RBP eCLIP10□□□□□ -0.81
CDKL5-208ENST00000624953 SP7Q8TDD2 431 aaPredicted RBP10□□□□□ -0.81
CDKL5-208ENST00000624953 SSUH2Q9Y2M2 353 aa10□□□□□ -0.81
CDKL5-208ENST00000624953 SPDYE2BA6NHP3 402 aa9.99□□□□□ -0.81
CDKL5-208ENST00000624953 SPDYE6P0CI01 402 aa9.99□□□□□ -0.81
CDKL5-208ENST00000624953 SPDYE2Q495Y8 402 aa9.99□□□□□ -0.81
CDKL5-208ENST00000624953 PROM2Q8N271 834 aa9.96□□□□□ -0.82
CDKL5-208ENST00000624953 HAX1O00165 279 aa9.94□□□□□ -0.82
CDKL5-208ENST00000624953 EVX2Q03828 476 aa9.92□□□□□ -0.82
CDKL5-208ENST00000624953 SPDYE4A6NLX3 237 aa9.89□□□□□ -0.83
CDKL5-208ENST00000624953 CLEC11AQ9Y240 323 aa9.89□□□□□ -0.83
CDKL5-208ENST00000624953 ZNF692Q9BU19 519 aaPredicted RBP9.87□□□□□ -0.83
CDKL5-208ENST00000624953 PRKAR2AP13861 404 aaKnown RBP9.83□□□□□ -0.84
CDKL5-208ENST00000624953 FKBP8Q14318 412 aa9.83□□□□□ -0.84
CDKL5-208ENST00000624953 SPDYE1Q8NFV5 336 aaPredicted RBP9.8□□□□□ -0.84
CDKL5-208ENST00000624953 CHADLQ6NUI6 762 aa9.77□□□□□ -0.85
CDKL5-208ENST00000624953 PABPN1Q86U42 306 aaKnown RBP eCLIP9.75□□□□□ -0.85
CDKL5-208ENST00000624953 C19orf67A6NJJ6 358 aa9.68□□□□□ -0.86
CDKL5-208ENST00000624953 PRR29P0C7W0 189 aa9.66□□□□□ -0.86
CDKL5-208ENST00000624953 GABBR2O75899 941 aa9.6□□□□□ -0.87
CDKL5-208ENST00000624953 STAG3Q9UJ98 1225 aa9.58□□□□□ -0.88
CDKL5-208ENST00000624953 FARP1Q9Y4F1 1045 aaPredicted RBP9.52□□□□□ -0.89
CDKL5-208ENST00000624953 FBXO3Q9UK99 471 aa9.5□□□□□ -0.89
CDKL5-208ENST00000624953 CD44P16070 742 aaKnown RBP9.49□□□□□ -0.89
CDKL5-208ENST00000624953 CREBZFQ9NS37 354 aa9.47□□□□□ -0.89
CDKL5-208ENST00000624953 POTEIP0CG38 1075 aa9.46□□□□□ -0.9
CDKL5-208ENST00000624953 MNX1P50219 401 aaPredicted RBP9.45□□□□□ -0.9
CDKL5-208ENST00000624953 VASPP50552 380 aaPredicted RBP9.44□□□□□ -0.9
CDKL5-208ENST00000624953 LHX8Q68G74 356 aa9.4□□□□□ -0.9
CDKL5-208ENST00000624953 ZRANB1Q9UGI0 708 aa9.36□□□□□ -0.91
CDKL5-208ENST00000624953 IFNLR1Q8IU57 520 aaPredicted RBP9.33□□□□□ -0.92
CDKL5-208ENST00000624953 ZNF579Q8NAF0 562 aaKnown RBP9.31□□□□□ -0.92
CDKL5-208ENST00000624953 GALR2O43603 387 aaPredicted RBP9.3□□□□□ -0.92
CDKL5-208ENST00000624953 MIER1Q8N108 512 aa9.29□□□□□ -0.92
CDKL5-208ENST00000624953 PHF12Q96QT6 1004 aa9.27□□□□□ -0.93
CDKL5-208ENST00000624953 NUBP1P53384 320 aa9.26□□□□□ -0.93
CDKL5-208ENST00000624953 DCBLD2Q96PD2 775 aa9.26□□□□□ -0.93
CDKL5-208ENST00000624953 PLCD3Q8N3E9 789 aa9.25□□□□□ -0.93
CDKL5-208ENST00000624953 ZBTB47Q9UFB7 747 aaPredicted RBP9.23□□□□□ -0.93
CDKL5-208ENST00000624953 CLCN6P51797 869 aa9.2□□□□□ -0.94
CDKL5-208ENST00000624953 PLEKHG5O94827 1062 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms