RNA–Protein interactions for RNA: ENST00000614377.1

CBWD3-209, Transcript of COBW domain containing 3, humanhuman

TSL 1 (best)

Gene CBWD3, Length 2,994 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-209ENST00000614377 AEBP2Q6ZN18 517 aaPredicted RBP10.99□□□□□ -0.65
CBWD3-209ENST00000614377 POTEDQ86YR6 584 aa10.45□□□□□ -0.74
CBWD3-209ENST00000614377 CHIC1Q5VXU3 224 aa10.25□□□□□ -0.77
CBWD3-209ENST00000614377 SENP3Q9H4L4 574 aaPredicted RBP9.39□□□□□ -0.91
CBWD3-209ENST00000614377 PHF23Q9BUL5 403 aaPredicted RBP9.25□□□□□ -0.93
CBWD3-209ENST00000614377 FOXD1Q16676 465 aa8.79□□□□□ -1
CBWD3-209ENST00000614377 MSH5O43196 834 aa8.28□□□□□ -1.08
CBWD3-209ENST00000614377 PIAS4Q8N2W9 510 aaPredicted RBP8.2□□□□□ -1.1
CBWD3-209ENST00000614377 PPP6R1Q9UPN7 881 aa8.08□□□□□ -1.12
CBWD3-209ENST00000614377 PLPPR3Q6T4P5 718 aa8.07□□□□□ -1.12
CBWD3-209ENST00000614377 ADRA2BP18089 450 aa8.06□□□□□ -1.12
CBWD3-209ENST00000614377 POTEHQ6S545 545 aa7.77□□□□□ -1.17
CBWD3-209ENST00000614377 MAPK8IP2Q13387 824 aaPredicted RBP7.47□□□□□ -1.21
CBWD3-209ENST00000614377 DMRT2Q9Y5R5 561 aa7.4□□□□□ -1.22
CBWD3-209ENST00000614377 SCAF1Q9H7N4 1312 aaKnown RBP7.32□□□□□ -1.24
CBWD3-209ENST00000614377 CACNB1Q02641 598 aaPredicted RBP7.29□□□□□ -1.24
CBWD3-209ENST00000614377 DCAF8L1A6NGE4 600 aa7.23□□□□□ -1.25
CBWD3-209ENST00000614377 PLSCR2Q9NRY7 297 aa7.19□□□□□ -1.26
CBWD3-209ENST00000614377 PPP4R3CPQ6ZMV5 832 aa7.07□□□□□ -1.28
CBWD3-209ENST00000614377 RNF39Q9H2S5 420 aa7.05□□□□□ -1.28
CBWD3-209ENST00000614377 HOXD11P31277 338 aaPredicted RBP7.02□□□□□ -1.28
CBWD3-209ENST00000614377 CNKSR2Q8WXI2 1034 aa6.95□□□□□ -1.3
CBWD3-209ENST00000614377 RNF216Q9NWF9 866 aaPredicted RBP6.93□□□□□ -1.3
CBWD3-209ENST00000614377 C1QBPQ07021 282 aaKnown RBP6.92□□□□□ -1.3
CBWD3-209ENST00000614377 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.78□□□□□ -1.32
CBWD3-209ENST00000614377 DNAJC5BQ9UF47 199 aa6.75□□□□□ -1.33
CBWD3-209ENST00000614377 NCBP3Q53F19 620 aaKnown RBP6.71□□□□□ -1.34
CBWD3-209ENST00000614377 NPM3O75607 178 aaKnown RBP6.63□□□□□ -1.35
CBWD3-209ENST00000614377 CAPN15O75808 1086 aa6.6□□□□□ -1.35
CBWD3-209ENST00000614377 SPINK5Q9NQ38 1064 aaPredicted RBP6.58□□□□□ -1.36
CBWD3-209ENST00000614377 U3KPZ7 1027 aaPredicted RBP6.58□□□□□ -1.36
CBWD3-209ENST00000614377 DSG3P32926 999 aa6.54□□□□□ -1.36
CBWD3-209ENST00000614377 TRHP20396 242 aaPredicted RBP6.45□□□□□ -1.38
CBWD3-209ENST00000614377 ABCB7O75027 752 aa6.45□□□□□ -1.38
CBWD3-209ENST00000614377 SLC4A2P04920 1241 aa6.38□□□□□ -1.39
CBWD3-209ENST00000614377 ZNF219Q9P2Y4 722 aaPredicted RBP6.36□□□□□ -1.39
CBWD3-209ENST00000614377 KCNA4P22459 653 aa6.36□□□□□ -1.39
CBWD3-209ENST00000614377 APLP2Q06481 763 aa6.34□□□□□ -1.39
CBWD3-209ENST00000614377 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.29□□□□□ -1.4
CBWD3-209ENST00000614377 HNRNPUL2Q1KMD3 747 aaKnown RBP6.29□□□□□ -1.4
CBWD3-209ENST00000614377 PCDH10Q9P2E7 1040 aa6.28□□□□□ -1.4
CBWD3-209ENST00000614377 SAMD1Q6SPF0 538 aaPredicted RBP6.26□□□□□ -1.41
CBWD3-209ENST00000614377 SP7Q8TDD2 431 aaPredicted RBP6.25□□□□□ -1.41
CBWD3-209ENST00000614377 RBM42Q9BTD8 480 aaKnown RBP6.24□□□□□ -1.41
CBWD3-209ENST00000614377 CHRDL2Q6WN34 429 aa6.22□□□□□ -1.41
CBWD3-209ENST00000614377 POLA2Q14181 598 aa6.19□□□□□ -1.42
CBWD3-209ENST00000614377 MYCNP04198 464 aaPredicted RBP6.13□□□□□ -1.43
CBWD3-209ENST00000614377 AKT1S1Q96B36 256 aa6.05□□□□□ -1.44
CBWD3-209ENST00000614377 ATF5Q9Y2D1 282 aaPredicted RBP6.04□□□□□ -1.44
CBWD3-209ENST00000614377 OSCARQ8IYS5 282 aa6.03□□□□□ -1.44
CBWD3-209ENST00000614377 REM2Q8IYK8 340 aaPredicted RBP6.02□□□□□ -1.45
CBWD3-209ENST00000614377 PIP4P2Q8N4L2 257 aa6.02□□□□□ -1.45
CBWD3-209ENST00000614377 HAX1O00165 279 aa6□□□□□ -1.45
CBWD3-209ENST00000614377 ZBTB12Q9Y330 459 aaPredicted RBP6□□□□□ -1.45
CBWD3-209ENST00000614377 PITPNM1O00562 1244 aa5.97□□□□□ -1.45
CBWD3-209ENST00000614377 SLC24A1O60721 1099 aa5.97□□□□□ -1.45
CBWD3-209ENST00000614377 FOXD4L1Q9NU39 408 aa5.97□□□□□ -1.45
CBWD3-209ENST00000614377 SLC4A1APQ9BWU0 796 aaKnown RBP5.95□□□□□ -1.46
CBWD3-209ENST00000614377 FXR2P51116 673 aaKnown RBP eCLIP5.91□□□□□ -1.46
CBWD3-209ENST00000614377 EVX2Q03828 476 aa5.89□□□□□ -1.47
CBWD3-209ENST00000614377 CLEC11AQ9Y240 323 aa5.85□□□□□ -1.47
CBWD3-209ENST00000614377 ZBTB22O15209 634 aa5.83□□□□□ -1.48
CBWD3-209ENST00000614377 PRKAR2AP13861 404 aaKnown RBP5.82□□□□□ -1.48
CBWD3-209ENST00000614377 SPDYE2BA6NHP3 402 aa5.81□□□□□ -1.48
CBWD3-209ENST00000614377 SPDYE6P0CI01 402 aa5.81□□□□□ -1.48
CBWD3-209ENST00000614377 SPDYE2Q495Y8 402 aa5.81□□□□□ -1.48
CBWD3-209ENST00000614377 FBLN2P98095 1184 aa5.8□□□□□ -1.48
CBWD3-209ENST00000614377 LHX8Q68G74 356 aa5.79□□□□□ -1.48
CBWD3-209ENST00000614377 SPDYE1Q8NFV5 336 aaPredicted RBP5.77□□□□□ -1.49
CBWD3-209ENST00000614377 CHADLQ6NUI6 762 aa5.75□□□□□ -1.49
CBWD3-209ENST00000614377 ZNF692Q9BU19 519 aaPredicted RBP5.75□□□□□ -1.49
CBWD3-209ENST00000614377 ATXN8OSP0DMR3 200 aa5.74□□□□□ -1.49
CBWD3-209ENST00000614377 C19orf67A6NJJ6 358 aa5.73□□□□□ -1.49
CBWD3-209ENST00000614377 GABBR2O75899 941 aa5.73□□□□□ -1.49
CBWD3-209ENST00000614377 MKRN4PQ13434 485 aaPredicted RBP5.73□□□□□ -1.49
CBWD3-209ENST00000614377 SSUH2Q9Y2M2 353 aa5.7□□□□□ -1.5
CBWD3-209ENST00000614377 PRR29P0C7W0 189 aa5.67□□□□□ -1.5
CBWD3-209ENST00000614377 PABPN1Q86U42 306 aaKnown RBP eCLIP5.67□□□□□ -1.5
CBWD3-209ENST00000614377 MYT1Q01538 1121 aa5.64□□□□□ -1.51
CBWD3-209ENST00000614377 CD44P16070 742 aaKnown RBP5.63□□□□□ -1.51
CBWD3-209ENST00000614377 PELP1Q8IZL8 1130 aaKnown RBP5.63□□□□□ -1.51
CBWD3-209ENST00000614377 POTEIP0CG38 1075 aa5.61□□□□□ -1.51
CBWD3-209ENST00000614377 FARP1Q9Y4F1 1045 aaPredicted RBP5.59□□□□□ -1.51
CBWD3-209ENST00000614377 TTBK1Q5TCY1 1321 aaPredicted RBP5.58□□□□□ -1.52
CBWD3-209ENST00000614377 DCBLD2Q96PD2 775 aa5.56□□□□□ -1.52
CBWD3-209ENST00000614377 ZRANB1Q9UGI0 708 aa5.52□□□□□ -1.53
CBWD3-209ENST00000614377 DAXXQ9UER7 740 aaPredicted RBP5.51□□□□□ -1.53
CBWD3-209ENST00000614377 ZNF579Q8NAF0 562 aaKnown RBP5.49□□□□□ -1.53
CBWD3-209ENST00000614377 GALR2O43603 387 aaPredicted RBP5.48□□□□□ -1.53
CBWD3-209ENST00000614377 CLCN6P51797 869 aa5.48□□□□□ -1.53
CBWD3-209ENST00000614377 POTEMA6NI47 508 aa5.46□□□□□ -1.54
CBWD3-209ENST00000614377 CREBZFQ9NS37 354 aa5.46□□□□□ -1.54
CBWD3-209ENST00000614377 PHF12Q96QT6 1004 aa5.45□□□□□ -1.54
CBWD3-209ENST00000614377 OTUD5Q96G74 571 aa5.44□□□□□ -1.54
CBWD3-209ENST00000614377 POTEB2H3BUK9 544 aa5.43□□□□□ -1.54
CBWD3-209ENST00000614377 PAK3O75914 559 aaPredicted RBP5.43□□□□□ -1.54
CBWD3-209ENST00000614377 PRKCSHP14314 528 aaPredicted RBP5.42□□□□□ -1.54
CBWD3-209ENST00000614377 STAG3Q9UJ98 1225 aa5.41□□□□□ -1.54
CBWD3-209ENST00000614377 POTEGQ6S5H5 508 aa5.39□□□□□ -1.55
CBWD3-209ENST00000614377 SPDYE4A6NLX3 237 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms