RNA–Protein interactions for RNA: ENST00000603648.1

FOCAD-208, Transcript of focadhesin, humanhuman

TSL 4

Gene FOCAD, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOCAD-208ENST00000603648 AEBP2Q6ZN18 517 aaPredicted RBP28.41■■■□□ 2.14
FOCAD-208ENST00000603648 CHIC1Q5VXU3 224 aa26.58■■□□□ 1.85
FOCAD-208ENST00000603648 SENP3Q9H4L4 574 aaPredicted RBP24.4■■□□□ 1.5
FOCAD-208ENST00000603648 PHF23Q9BUL5 403 aaPredicted RBP23.96■■□□□ 1.43
FOCAD-208ENST00000603648 FOXD1Q16676 465 aa22.85■■□□□ 1.25
FOCAD-208ENST00000603648 POTEDQ86YR6 584 aa22.78■■□□□ 1.24
FOCAD-208ENST00000603648 MSH5O43196 834 aa21.75■■□□□ 1.07
FOCAD-208ENST00000603648 PIAS4Q8N2W9 510 aaPredicted RBP21.18■□□□□ 0.98
FOCAD-208ENST00000603648 PPP6R1Q9UPN7 881 aa20.66■□□□□ 0.9
FOCAD-208ENST00000603648 ADRA2BP18089 450 aa20.57■□□□□ 0.88
FOCAD-208ENST00000603648 PLPPR3Q6T4P5 718 aa20.46■□□□□ 0.87
FOCAD-208ENST00000603648 CACNB1Q02641 598 aaPredicted RBP19.28■□□□□ 0.68
FOCAD-208ENST00000603648 MAPK8IP2Q13387 824 aaPredicted RBP19.18■□□□□ 0.66
FOCAD-208ENST00000603648 DMRT2Q9Y5R5 561 aa19.18■□□□□ 0.66
FOCAD-208ENST00000603648 SCAF1Q9H7N4 1312 aaKnown RBP18.84■□□□□ 0.61
FOCAD-208ENST00000603648 DCAF8L1A6NGE4 600 aa18.59■□□□□ 0.57
FOCAD-208ENST00000603648 RNF39Q9H2S5 420 aa18.45■□□□□ 0.54
FOCAD-208ENST00000603648 C1QBPQ07021 282 aaKnown RBP18.13■□□□□ 0.49
FOCAD-208ENST00000603648 HOXD11P31277 338 aaPredicted RBP18.1■□□□□ 0.49
FOCAD-208ENST00000603648 PPP4R3CPQ6ZMV5 832 aa17.82■□□□□ 0.44
FOCAD-208ENST00000603648 RNF216Q9NWF9 866 aaPredicted RBP17.74■□□□□ 0.43
FOCAD-208ENST00000603648 POTEHQ6S545 545 aa17.69■□□□□ 0.42
FOCAD-208ENST00000603648 CNKSR2Q8WXI2 1034 aa17.69■□□□□ 0.42
FOCAD-208ENST00000603648 DNAJC5BQ9UF47 199 aa17.6■□□□□ 0.41
FOCAD-208ENST00000603648 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.35■□□□□ 0.37
FOCAD-208ENST00000603648 DSG3P32926 999 aa16.98■□□□□ 0.31
FOCAD-208ENST00000603648 CAPN15O75808 1086 aa16.95■□□□□ 0.3
FOCAD-208ENST00000603648 NCBP3Q53F19 620 aaKnown RBP16.88■□□□□ 0.29
FOCAD-208ENST00000603648 SPINK5Q9NQ38 1064 aaPredicted RBP16.88■□□□□ 0.29
FOCAD-208ENST00000603648 U3KPZ7 1027 aaPredicted RBP16.82■□□□□ 0.28
FOCAD-208ENST00000603648 NPM3O75607 178 aaKnown RBP16.6■□□□□ 0.25
FOCAD-208ENST00000603648 ABCB7O75027 752 aa16.47■□□□□ 0.23
FOCAD-208ENST00000603648 TRHP20396 242 aaPredicted RBP16.46■□□□□ 0.23
FOCAD-208ENST00000603648 ZNF219Q9P2Y4 722 aaPredicted RBP16.34■□□□□ 0.21
FOCAD-208ENST00000603648 APLP2Q06481 763 aa16.29■□□□□ 0.2
FOCAD-208ENST00000603648 CHRDL2Q6WN34 429 aa16.26■□□□□ 0.19
FOCAD-208ENST00000603648 RBM42Q9BTD8 480 aaKnown RBP16.25■□□□□ 0.19
FOCAD-208ENST00000603648 SP7Q8TDD2 431 aaPredicted RBP16.15■□□□□ 0.18
FOCAD-208ENST00000603648 SLC4A2P04920 1241 aa16.08■□□□□ 0.16
FOCAD-208ENST00000603648 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.04■□□□□ 0.16
FOCAD-208ENST00000603648 HNRNPUL2Q1KMD3 747 aaKnown RBP16.04■□□□□ 0.16
FOCAD-208ENST00000603648 SAMD1Q6SPF0 538 aaPredicted RBP15.91■□□□□ 0.14
FOCAD-208ENST00000603648 POLA2Q14181 598 aa15.77■□□□□ 0.12
FOCAD-208ENST00000603648 HAX1O00165 279 aa15.7■□□□□ 0.1
FOCAD-208ENST00000603648 PIP4P2Q8N4L2 257 aa15.67■□□□□ 0.1
FOCAD-208ENST00000603648 AKT1S1Q96B36 256 aa15.66■□□□□ 0.1
FOCAD-208ENST00000603648 REM2Q8IYK8 340 aaPredicted RBP15.53■□□□□ 0.08
FOCAD-208ENST00000603648 KCNA4P22459 653 aa15.49■□□□□ 0.07
FOCAD-208ENST00000603648 PITPNM1O00562 1244 aa15.39■□□□□ 0.05
FOCAD-208ENST00000603648 MYCNP04198 464 aaPredicted RBP15.39■□□□□ 0.05
FOCAD-208ENST00000603648 FXR2P51116 673 aaKnown RBP eCLIP15.39■□□□□ 0.05
FOCAD-208ENST00000603648 EVX2Q03828 476 aa15.36■□□□□ 0.05
FOCAD-208ENST00000603648 ZBTB12Q9Y330 459 aaPredicted RBP15.35■□□□□ 0.05
FOCAD-208ENST00000603648 OSCARQ8IYS5 282 aa15.3■□□□□ 0.04
FOCAD-208ENST00000603648 LHX8Q68G74 356 aa15.15■□□□□ 0.02
FOCAD-208ENST00000603648 ATF5Q9Y2D1 282 aaPredicted RBP15.11■□□□□ 0.01
FOCAD-208ENST00000603648 PLSCR2Q9NRY7 297 aa15.04■□□□□ -0
FOCAD-208ENST00000603648 PRKAR2AP13861 404 aaKnown RBP15□□□□□ -0.01
FOCAD-208ENST00000603648 GABBR2O75899 941 aa14.99□□□□□ -0.01
FOCAD-208ENST00000603648 C19orf67A6NJJ6 358 aa14.95□□□□□ -0.02
FOCAD-208ENST00000603648 CLEC11AQ9Y240 323 aa14.88□□□□□ -0.03
FOCAD-208ENST00000603648 SPDYE2BA6NHP3 402 aa14.79□□□□□ -0.04
FOCAD-208ENST00000603648 SPDYE6P0CI01 402 aa14.79□□□□□ -0.04
FOCAD-208ENST00000603648 SPDYE2Q495Y8 402 aa14.79□□□□□ -0.04
FOCAD-208ENST00000603648 SPDYE1Q8NFV5 336 aaPredicted RBP14.78□□□□□ -0.04
FOCAD-208ENST00000603648 FOXD4L1Q9NU39 408 aa14.74□□□□□ -0.05
FOCAD-208ENST00000603648 CHADLQ6NUI6 762 aa14.66□□□□□ -0.06
FOCAD-208ENST00000603648 POTEIP0CG38 1075 aa14.62□□□□□ -0.07
FOCAD-208ENST00000603648 FBLN2P98095 1184 aa14.62□□□□□ -0.07
FOCAD-208ENST00000603648 SLC4A1APQ9BWU0 796 aaKnown RBP14.55□□□□□ -0.08
FOCAD-208ENST00000603648 ZNF692Q9BU19 519 aaPredicted RBP14.52□□□□□ -0.09
FOCAD-208ENST00000603648 CD44P16070 742 aaKnown RBP14.48□□□□□ -0.09
FOCAD-208ENST00000603648 PRR29P0C7W0 189 aa14.46□□□□□ -0.09
FOCAD-208ENST00000603648 SSUH2Q9Y2M2 353 aa14.46□□□□□ -0.09
FOCAD-208ENST00000603648 DCBLD2Q96PD2 775 aa14.44□□□□□ -0.1
FOCAD-208ENST00000603648 CLCN6P51797 869 aa14.39□□□□□ -0.11
FOCAD-208ENST00000603648 MKRN4PQ13434 485 aaPredicted RBP14.34□□□□□ -0.11
FOCAD-208ENST00000603648 POTEMA6NI47 508 aa14.33□□□□□ -0.12
FOCAD-208ENST00000603648 ATXN8OSP0DMR3 200 aa14.33□□□□□ -0.12
FOCAD-208ENST00000603648 FARP1Q9Y4F1 1045 aaPredicted RBP14.31□□□□□ -0.12
FOCAD-208ENST00000603648 PABPN1Q86U42 306 aaKnown RBP eCLIP14.27□□□□□ -0.13
FOCAD-208ENST00000603648 OTUD5Q96G74 571 aa14.27□□□□□ -0.13
FOCAD-208ENST00000603648 POTEGQ6S5H5 508 aa14.25□□□□□ -0.13
FOCAD-208ENST00000603648 EHMT2Q96KQ7 1210 aa14.24□□□□□ -0.13
FOCAD-208ENST00000603648 ZBTB22O15209 634 aa14.2□□□□□ -0.14
FOCAD-208ENST00000603648 ZNF579Q8NAF0 562 aaKnown RBP14.16□□□□□ -0.14
FOCAD-208ENST00000603648 ZRANB1Q9UGI0 708 aa14.14□□□□□ -0.15
FOCAD-208ENST00000603648 POTEB2H3BUK9 544 aa14.13□□□□□ -0.15
FOCAD-208ENST00000603648 PCDH10Q9P2E7 1040 aa14.09□□□□□ -0.15
FOCAD-208ENST00000603648 GALR2O43603 387 aaPredicted RBP14.08□□□□□ -0.16
FOCAD-208ENST00000603648 CSRNP3Q8WYN3 585 aa14.08□□□□□ -0.16
FOCAD-208ENST00000603648 PELP1Q8IZL8 1130 aaKnown RBP13.87□□□□□ -0.19
FOCAD-208ENST00000603648 PAK3O75914 559 aaPredicted RBP13.85□□□□□ -0.19
FOCAD-208ENST00000603648 PHF12Q96QT6 1004 aa13.85□□□□□ -0.19
FOCAD-208ENST00000603648 CREBZFQ9NS37 354 aa13.83□□□□□ -0.2
FOCAD-208ENST00000603648 FAM163AQ96GL9 167 aaPredicted RBP13.82□□□□□ -0.2
FOCAD-208ENST00000603648 METRNQ9UJH8 293 aa13.81□□□□□ -0.2
FOCAD-208ENST00000603648 LCE2DQ5TA82 110 aaPredicted RBP13.78□□□□□ -0.2
FOCAD-208ENST00000603648 MAMSTRQ6ZN01 415 aa13.78□□□□□ -0.2
FOCAD-208ENST00000603648 POTEJP0CG39 1038 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms