RNA–Protein interactions for RNA: ENST00000590723.5

NPC1-209, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

TSL 4

Gene NPC1, Length 755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-209ENST00000590723 AEBP2Q6ZN18 517 aaPredicted RBP35.22■■■■□ 3.23
NPC1-209ENST00000590723 CHIC1Q5VXU3 224 aa34.29■■■■□ 3.08
NPC1-209ENST00000590723 SENP3Q9H4L4 574 aaPredicted RBP30.15■■■□□ 2.42
NPC1-209ENST00000590723 PHF23Q9BUL5 403 aaPredicted RBP30■■■□□ 2.39
NPC1-209ENST00000590723 FOXD1Q16676 465 aa27.86■■■□□ 2.05
NPC1-209ENST00000590723 PLPPR3Q6T4P5 718 aa27.83■■■□□ 2.05
NPC1-209ENST00000590723 ADRA2BP18089 450 aa26.54■■□□□ 1.84
NPC1-209ENST00000590723 PPP6R1Q9UPN7 881 aa26.54■■□□□ 1.84
NPC1-209ENST00000590723 PIAS4Q8N2W9 510 aaPredicted RBP26.3■■□□□ 1.8
NPC1-209ENST00000590723 MSH5O43196 834 aa25.98■■□□□ 1.75
NPC1-209ENST00000590723 SCAF1Q9H7N4 1312 aaKnown RBP24.56■■□□□ 1.52
NPC1-209ENST00000590723 PPP4R3CPQ6ZMV5 832 aa24.41■■□□□ 1.5
NPC1-209ENST00000590723 MAPK8IP2Q13387 824 aaPredicted RBP24.12■■□□□ 1.45
NPC1-209ENST00000590723 DMRT2Q9Y5R5 561 aa23.96■■□□□ 1.43
NPC1-209ENST00000590723 POTEDQ86YR6 584 aa23.95■■□□□ 1.42
NPC1-209ENST00000590723 NCBP3Q53F19 620 aaKnown RBP23.85■■□□□ 1.41
NPC1-209ENST00000590723 CNKSR2Q8WXI2 1034 aa23.85■■□□□ 1.41
NPC1-209ENST00000590723 KCNA4P22459 653 aa23.48■■□□□ 1.35
NPC1-209ENST00000590723 RNF216Q9NWF9 866 aaPredicted RBP23.44■■□□□ 1.34
NPC1-209ENST00000590723 HOXD11P31277 338 aaPredicted RBP23.37■■□□□ 1.33
NPC1-209ENST00000590723 NPM3O75607 178 aaKnown RBP23.31■■□□□ 1.32
NPC1-209ENST00000590723 DCAF8L1A6NGE4 600 aa22.98■■□□□ 1.27
NPC1-209ENST00000590723 DNAJC5BQ9UF47 199 aa22.77■■□□□ 1.24
NPC1-209ENST00000590723 SLC4A1APQ9BWU0 796 aaKnown RBP22.41■■□□□ 1.18
NPC1-209ENST00000590723 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.33■■□□□ 1.17
NPC1-209ENST00000590723 RNF39Q9H2S5 420 aa22.12■■□□□ 1.13
NPC1-209ENST00000590723 SLC4A2P04920 1241 aa22.02■■□□□ 1.12
NPC1-209ENST00000590723 C1QBPQ07021 282 aaKnown RBP21.94■■□□□ 1.1
NPC1-209ENST00000590723 U3KPZ7 1027 aaPredicted RBP21.83■■□□□ 1.09
NPC1-209ENST00000590723 CACNB1Q02641 598 aaPredicted RBP21.8■■□□□ 1.08
NPC1-209ENST00000590723 FOXD4L1Q9NU39 408 aa21.8■■□□□ 1.08
NPC1-209ENST00000590723 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.71■■□□□ 1.07
NPC1-209ENST00000590723 HNRNPUL2Q1KMD3 747 aaKnown RBP21.71■■□□□ 1.07
NPC1-209ENST00000590723 MYCNP04198 464 aaPredicted RBP21.66■■□□□ 1.06
NPC1-209ENST00000590723 APLP2Q06481 763 aa21.6■■□□□ 1.05
NPC1-209ENST00000590723 SAMD1Q6SPF0 538 aaPredicted RBP21.56■■□□□ 1.04
NPC1-209ENST00000590723 ZBTB22O15209 634 aa21.52■■□□□ 1.04
NPC1-209ENST00000590723 EHMT2Q96KQ7 1210 aa21.41■■□□□ 1.02
NPC1-209ENST00000590723 CAPN15O75808 1086 aa21.31■■□□□ 1
NPC1-209ENST00000590723 CSRNP3Q8WYN3 585 aa21.26■□□□□ 0.99
NPC1-209ENST00000590723 SPINK5Q9NQ38 1064 aaPredicted RBP21.26■□□□□ 0.99
NPC1-209ENST00000590723 ZNF219Q9P2Y4 722 aaPredicted RBP21.22■□□□□ 0.99
NPC1-209ENST00000590723 TRHP20396 242 aaPredicted RBP21.13■□□□□ 0.97
NPC1-209ENST00000590723 ATXN8OSP0DMR3 200 aa21.12■□□□□ 0.97
NPC1-209ENST00000590723 DSG3P32926 999 aa20.95■□□□□ 0.94
NPC1-209ENST00000590723 ATF5Q9Y2D1 282 aaPredicted RBP20.89■□□□□ 0.93
NPC1-209ENST00000590723 ABCB7O75027 752 aa20.8■□□□□ 0.92
NPC1-209ENST00000590723 POLA2Q14181 598 aa20.71■□□□□ 0.91
NPC1-209ENST00000590723 ZBTB12Q9Y330 459 aaPredicted RBP20.52■□□□□ 0.88
NPC1-209ENST00000590723 FBLN2P98095 1184 aa20.3■□□□□ 0.84
NPC1-209ENST00000590723 RBM42Q9BTD8 480 aaKnown RBP20.16■□□□□ 0.82
NPC1-209ENST00000590723 MKRN4PQ13434 485 aaPredicted RBP19.99■□□□□ 0.79
NPC1-209ENST00000590723 OSCARQ8IYS5 282 aa19.99■□□□□ 0.79
NPC1-209ENST00000590723 SPDYE2BA6NHP3 402 aa19.87■□□□□ 0.77
NPC1-209ENST00000590723 SPDYE6P0CI01 402 aa19.87■□□□□ 0.77
NPC1-209ENST00000590723 SPDYE2Q495Y8 402 aa19.87■□□□□ 0.77
NPC1-209ENST00000590723 AKT1S1Q96B36 256 aa19.77■□□□□ 0.76
NPC1-209ENST00000590723 ZNF692Q9BU19 519 aaPredicted RBP19.72■□□□□ 0.75
NPC1-209ENST00000590723 SSUH2Q9Y2M2 353 aa19.6■□□□□ 0.73
NPC1-209ENST00000590723 SPDYE4A6NLX3 237 aa19.56■□□□□ 0.72
NPC1-209ENST00000590723 REM2Q8IYK8 340 aaPredicted RBP19.51■□□□□ 0.71
NPC1-209ENST00000590723 PABPN1Q86U42 306 aaKnown RBP eCLIP19.41■□□□□ 0.7
NPC1-209ENST00000590723 SPDYE1Q8NFV5 336 aaPredicted RBP19.36■□□□□ 0.69
NPC1-209ENST00000590723 FKBP8Q14318 412 aa19.3■□□□□ 0.68
NPC1-209ENST00000590723 CHRDL2Q6WN34 429 aa19.3■□□□□ 0.68
NPC1-209ENST00000590723 PITPNM1O00562 1244 aa19.26■□□□□ 0.67
NPC1-209ENST00000590723 CLEC11AQ9Y240 323 aa19.23■□□□□ 0.67
NPC1-209ENST00000590723 STAG3Q9UJ98 1225 aa19.19■□□□□ 0.66
NPC1-209ENST00000590723 PROM2Q8N271 834 aa19.14■□□□□ 0.65
NPC1-209ENST00000590723 PRR29P0C7W0 189 aa19.06■□□□□ 0.64
NPC1-209ENST00000590723 FXR2P51116 673 aaKnown RBP eCLIP18.98■□□□□ 0.63
NPC1-209ENST00000590723 POTEHQ6S545 545 aa18.96■□□□□ 0.63
NPC1-209ENST00000590723 PIP4P2Q8N4L2 257 aa18.94■□□□□ 0.62
NPC1-209ENST00000590723 FBXO3Q9UK99 471 aa18.85■□□□□ 0.61
NPC1-209ENST00000590723 PRKAR2AP13861 404 aaKnown RBP18.82■□□□□ 0.6
NPC1-209ENST00000590723 PLEKHG5O94827 1062 aa18.71■□□□□ 0.59
NPC1-209ENST00000590723 CHADLQ6NUI6 762 aa18.68■□□□□ 0.58
NPC1-209ENST00000590723 CREBZFQ9NS37 354 aa18.64■□□□□ 0.57
NPC1-209ENST00000590723 MIER1Q8N108 512 aa18.61■□□□□ 0.57
NPC1-209ENST00000590723 PLCD3Q8N3E9 789 aa18.59■□□□□ 0.57
NPC1-209ENST00000590723 FARP1Q9Y4F1 1045 aaPredicted RBP18.56■□□□□ 0.56
NPC1-209ENST00000590723 NPM1P06748 294 aaKnown RBP eCLIP18.51■□□□□ 0.55
NPC1-209ENST00000590723 ZBTB47Q9UFB7 747 aaPredicted RBP18.5■□□□□ 0.55
NPC1-209ENST00000590723 HAX1O00165 279 aa18.47■□□□□ 0.55
NPC1-209ENST00000590723 VASPP50552 380 aaPredicted RBP18.46■□□□□ 0.55
NPC1-209ENST00000590723 MNX1P50219 401 aaPredicted RBP18.38■□□□□ 0.53
NPC1-209ENST00000590723 C19orf67A6NJJ6 358 aa18.34■□□□□ 0.53
NPC1-209ENST00000590723 PAK3O75914 559 aaPredicted RBP18.3■□□□□ 0.52
NPC1-209ENST00000590723 CD44P16070 742 aaKnown RBP18.28■□□□□ 0.52
NPC1-209ENST00000590723 KLHL34Q8N239 644 aa18.28■□□□□ 0.52
NPC1-209ENST00000590723 SP7Q8TDD2 431 aaPredicted RBP18.14■□□□□ 0.49
NPC1-209ENST00000590723 ZRANB1Q9UGI0 708 aa18.14■□□□□ 0.49
NPC1-209ENST00000590723 IFNLR1Q8IU57 520 aaPredicted RBP18.12■□□□□ 0.49
NPC1-209ENST00000590723 EVX2Q03828 476 aa18.11■□□□□ 0.49
NPC1-209ENST00000590723 CLCN6P51797 869 aa18.08■□□□□ 0.48
NPC1-209ENST00000590723 NUBP1P53384 320 aa18.07■□□□□ 0.48
NPC1-209ENST00000590723 FAM212AQ96EL1 285 aa18.07■□□□□ 0.48
NPC1-209ENST00000590723 SPOCK2Q92563 424 aa18.06■□□□□ 0.48
NPC1-209ENST00000590723 TSPYL2Q9H2G4 693 aaPredicted RBP18.06■□□□□ 0.48
NPC1-209ENST00000590723 RASEFQ8IZ41 740 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms