RNA–Protein interactions for RNA: ENST00000590484.1

LINC01539-204, Transcript of long intergenic non-protein coding RNA 1539, humanhuman

TSL 4

Gene LINC01539, Length 546 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01539-204ENST00000590484 AEBP2Q6ZN18 517 aaPredicted RBP22.79■■□□□ 1.24
LINC01539-204ENST00000590484 CHIC1Q5VXU3 224 aa21.34■■□□□ 1.01
LINC01539-204ENST00000590484 SENP3Q9H4L4 574 aaPredicted RBP19.25■□□□□ 0.67
LINC01539-204ENST00000590484 PHF23Q9BUL5 403 aaPredicted RBP19.07■□□□□ 0.64
LINC01539-204ENST00000590484 FOXD1Q16676 465 aa18.11■□□□□ 0.49
LINC01539-204ENST00000590484 PLPPR3Q6T4P5 718 aa16.89■□□□□ 0.29
LINC01539-204ENST00000590484 POTEDQ86YR6 584 aa16.88■□□□□ 0.29
LINC01539-204ENST00000590484 PPP6R1Q9UPN7 881 aa16.88■□□□□ 0.29
LINC01539-204ENST00000590484 MSH5O43196 834 aa16.84■□□□□ 0.29
LINC01539-204ENST00000590484 PIAS4Q8N2W9 510 aaPredicted RBP16.84■□□□□ 0.29
LINC01539-204ENST00000590484 ADRA2BP18089 450 aa16.79■□□□□ 0.28
LINC01539-204ENST00000590484 MAPK8IP2Q13387 824 aaPredicted RBP15.51■□□□□ 0.07
LINC01539-204ENST00000590484 DMRT2Q9Y5R5 561 aa15.29■□□□□ 0.04
LINC01539-204ENST00000590484 SCAF1Q9H7N4 1312 aaKnown RBP15.08■□□□□ 0
LINC01539-204ENST00000590484 PPP4R3CPQ6ZMV5 832 aa14.87□□□□□ -0.03
LINC01539-204ENST00000590484 DCAF8L1A6NGE4 600 aa14.72□□□□□ -0.05
LINC01539-204ENST00000590484 HOXD11P31277 338 aaPredicted RBP14.65□□□□□ -0.06
LINC01539-204ENST00000590484 CACNB1Q02641 598 aaPredicted RBP14.63□□□□□ -0.07
LINC01539-204ENST00000590484 CNKSR2Q8WXI2 1034 aa14.55□□□□□ -0.08
LINC01539-204ENST00000590484 RNF216Q9NWF9 866 aaPredicted RBP14.47□□□□□ -0.09
LINC01539-204ENST00000590484 RNF39Q9H2S5 420 aa14.44□□□□□ -0.1
LINC01539-204ENST00000590484 C1QBPQ07021 282 aaKnown RBP14.13□□□□□ -0.15
LINC01539-204ENST00000590484 NCBP3Q53F19 620 aaKnown RBP14.09□□□□□ -0.15
LINC01539-204ENST00000590484 NPM3O75607 178 aaKnown RBP14.08□□□□□ -0.16
LINC01539-204ENST00000590484 DNAJC5BQ9UF47 199 aa14.02□□□□□ -0.17
LINC01539-204ENST00000590484 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.95□□□□□ -0.18
LINC01539-204ENST00000590484 KCNA4P22459 653 aa13.84□□□□□ -0.19
LINC01539-204ENST00000590484 U3KPZ7 1027 aaPredicted RBP13.73□□□□□ -0.21
LINC01539-204ENST00000590484 SPINK5Q9NQ38 1064 aaPredicted RBP13.63□□□□□ -0.23
LINC01539-204ENST00000590484 SLC4A2P04920 1241 aa13.53□□□□□ -0.24
LINC01539-204ENST00000590484 CAPN15O75808 1086 aa13.51□□□□□ -0.25
LINC01539-204ENST00000590484 DSG3P32926 999 aa13.5□□□□□ -0.25
LINC01539-204ENST00000590484 EHMT2Q96KQ7 1210 aa13.31□□□□□ -0.28
LINC01539-204ENST00000590484 TRHP20396 242 aaPredicted RBP13.29□□□□□ -0.28
LINC01539-204ENST00000590484 ABCB7O75027 752 aa13.28□□□□□ -0.28
LINC01539-204ENST00000590484 SLC4A1APQ9BWU0 796 aaKnown RBP13.18□□□□□ -0.3
LINC01539-204ENST00000590484 POTEHQ6S545 545 aa13.17□□□□□ -0.3
LINC01539-204ENST00000590484 ZNF219Q9P2Y4 722 aaPredicted RBP13.12□□□□□ -0.31
LINC01539-204ENST00000590484 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.04□□□□□ -0.32
LINC01539-204ENST00000590484 APLP2Q06481 763 aa13.04□□□□□ -0.32
LINC01539-204ENST00000590484 HNRNPUL2Q1KMD3 747 aaKnown RBP13.04□□□□□ -0.32
LINC01539-204ENST00000590484 SAMD1Q6SPF0 538 aaPredicted RBP13.02□□□□□ -0.33
LINC01539-204ENST00000590484 MYCNP04198 464 aaPredicted RBP12.93□□□□□ -0.34
LINC01539-204ENST00000590484 POLA2Q14181 598 aa12.88□□□□□ -0.35
LINC01539-204ENST00000590484 ATF5Q9Y2D1 282 aaPredicted RBP12.84□□□□□ -0.35
LINC01539-204ENST00000590484 FOXD4L1Q9NU39 408 aa12.73□□□□□ -0.37
LINC01539-204ENST00000590484 RBM42Q9BTD8 480 aaKnown RBP12.72□□□□□ -0.37
LINC01539-204ENST00000590484 ZBTB22O15209 634 aa12.7□□□□□ -0.38
LINC01539-204ENST00000590484 CSRNP3Q8WYN3 585 aa12.68□□□□□ -0.38
LINC01539-204ENST00000590484 CHRDL2Q6WN34 429 aa12.64□□□□□ -0.39
LINC01539-204ENST00000590484 OSCARQ8IYS5 282 aa12.53□□□□□ -0.4
LINC01539-204ENST00000590484 AKT1S1Q96B36 256 aa12.45□□□□□ -0.42
LINC01539-204ENST00000590484 REM2Q8IYK8 340 aaPredicted RBP12.42□□□□□ -0.42
LINC01539-204ENST00000590484 ZBTB12Q9Y330 459 aaPredicted RBP12.42□□□□□ -0.42
LINC01539-204ENST00000590484 SLC24A1O60721 1099 aa12.37□□□□□ -0.43
LINC01539-204ENST00000590484 PIP4P2Q8N4L2 257 aa12.35□□□□□ -0.43
LINC01539-204ENST00000590484 PITPNM1O00562 1244 aa12.33□□□□□ -0.44
LINC01539-204ENST00000590484 ATXN8OSP0DMR3 200 aa12.24□□□□□ -0.45
LINC01539-204ENST00000590484 SP7Q8TDD2 431 aaPredicted RBP12.24□□□□□ -0.45
LINC01539-204ENST00000590484 FXR2P51116 673 aaKnown RBP eCLIP12.2□□□□□ -0.46
LINC01539-204ENST00000590484 MKRN4PQ13434 485 aaPredicted RBP12.2□□□□□ -0.46
LINC01539-204ENST00000590484 EVX2Q03828 476 aa12.12□□□□□ -0.47
LINC01539-204ENST00000590484 HAX1O00165 279 aa12.11□□□□□ -0.47
LINC01539-204ENST00000590484 SPDYE2BA6NHP3 402 aa12.1□□□□□ -0.47
LINC01539-204ENST00000590484 SPDYE6P0CI01 402 aa12.1□□□□□ -0.47
LINC01539-204ENST00000590484 FBLN2P98095 1184 aa12.1□□□□□ -0.47
LINC01539-204ENST00000590484 SPDYE2Q495Y8 402 aa12.1□□□□□ -0.47
LINC01539-204ENST00000590484 RTN4Q9NQC3 1192 aaKnown RBP12.05□□□□□ -0.48
LINC01539-204ENST00000590484 CLEC11AQ9Y240 323 aa12.02□□□□□ -0.49
LINC01539-204ENST00000590484 AMER1Q5JTC6 1135 aaPredicted RBP11.99□□□□□ -0.49
LINC01539-204ENST00000590484 SSUH2Q9Y2M2 353 aa11.99□□□□□ -0.49
LINC01539-204ENST00000590484 PRKAR2AP13861 404 aaKnown RBP11.98□□□□□ -0.49
LINC01539-204ENST00000590484 ZNF692Q9BU19 519 aaPredicted RBP11.98□□□□□ -0.49
LINC01539-204ENST00000590484 SPDYE1Q8NFV5 336 aaPredicted RBP11.93□□□□□ -0.5
LINC01539-204ENST00000590484 CHADLQ6NUI6 762 aa11.89□□□□□ -0.51
LINC01539-204ENST00000590484 PABPN1Q86U42 306 aaKnown RBP eCLIP11.85□□□□□ -0.51
LINC01539-204ENST00000590484 C19orf67A6NJJ6 358 aa11.81□□□□□ -0.52
LINC01539-204ENST00000590484 PRR29P0C7W0 189 aa11.73□□□□□ -0.53
LINC01539-204ENST00000590484 GABBR2O75899 941 aa11.7□□□□□ -0.54
LINC01539-204ENST00000590484 FARP1Q9Y4F1 1045 aaPredicted RBP11.59□□□□□ -0.55
LINC01539-204ENST00000590484 CD44P16070 742 aaKnown RBP11.57□□□□□ -0.56
LINC01539-204ENST00000590484 POTEIP0CG38 1075 aa11.55□□□□□ -0.56
LINC01539-204ENST00000590484 CREBZFQ9NS37 354 aa11.49□□□□□ -0.57
LINC01539-204ENST00000590484 SPDYE4A6NLX3 237 aa11.48□□□□□ -0.57
LINC01539-204ENST00000590484 LHX8Q68G74 356 aa11.48□□□□□ -0.57
LINC01539-204ENST00000590484 FKBP8Q14318 412 aa11.46□□□□□ -0.57
LINC01539-204ENST00000590484 ZRANB1Q9UGI0 708 aa11.39□□□□□ -0.59
LINC01539-204ENST00000590484 ZNF579Q8NAF0 562 aaKnown RBP11.36□□□□□ -0.59
LINC01539-204ENST00000590484 GALR2O43603 387 aaPredicted RBP11.34□□□□□ -0.59
LINC01539-204ENST00000590484 PHF12Q96QT6 1004 aa11.3□□□□□ -0.6
LINC01539-204ENST00000590484 STAG3Q9UJ98 1225 aa11.3□□□□□ -0.6
LINC01539-204ENST00000590484 MNX1P50219 401 aaPredicted RBP11.29□□□□□ -0.6
LINC01539-204ENST00000590484 DCBLD2Q96PD2 775 aa11.28□□□□□ -0.6
LINC01539-204ENST00000590484 CLCN6P51797 869 aa11.2□□□□□ -0.62
LINC01539-204ENST00000590484 POTEB2H3BUK9 544 aa11.19□□□□□ -0.62
LINC01539-204ENST00000590484 PELP1Q8IZL8 1130 aaKnown RBP11.16□□□□□ -0.62
LINC01539-204ENST00000590484 PROM2Q8N271 834 aa11.13□□□□□ -0.63
LINC01539-204ENST00000590484 PAK3O75914 559 aaPredicted RBP11.12□□□□□ -0.63
LINC01539-204ENST00000590484 OTUD5Q96G74 571 aa11.11□□□□□ -0.63
LINC01539-204ENST00000590484 MS4A3Q96HJ5 214 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms