RNA–Protein interactions for RNA: ENST00000589444.1

PTPN2-209, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

Gene PTPN2, Length 2,264 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-209ENST00000589444 AEBP2Q6ZN18 517 aaPredicted RBP14.96□□□□□ -0.01
PTPN2-209ENST00000589444 CHIC1Q5VXU3 224 aa14.17□□□□□ -0.14
PTPN2-209ENST00000589444 SENP3Q9H4L4 574 aaPredicted RBP13□□□□□ -0.33
PTPN2-209ENST00000589444 PHF23Q9BUL5 403 aaPredicted RBP12.68□□□□□ -0.38
PTPN2-209ENST00000589444 POTEDQ86YR6 584 aa12.44□□□□□ -0.42
PTPN2-209ENST00000589444 FOXD1Q16676 465 aa12.04□□□□□ -0.48
PTPN2-209ENST00000589444 SLC24A1O60721 1099 aa11.83□□□□□ -0.52
PTPN2-209ENST00000589444 MSH5O43196 834 aa11.58□□□□□ -0.56
PTPN2-209ENST00000589444 EHMT2Q96KQ7 1210 aa11.21□□□□□ -0.61
PTPN2-209ENST00000589444 PIAS4Q8N2W9 510 aaPredicted RBP11.18□□□□□ -0.62
PTPN2-209ENST00000589444 PLPPR3Q6T4P5 718 aa11.02□□□□□ -0.65
PTPN2-209ENST00000589444 PPP6R1Q9UPN7 881 aa10.87□□□□□ -0.67
PTPN2-209ENST00000589444 ADRA2BP18089 450 aa10.84□□□□□ -0.67
PTPN2-209ENST00000589444 RTN4Q9NQC3 1192 aaKnown RBP10.74□□□□□ -0.69
PTPN2-209ENST00000589444 AMER1Q5JTC6 1135 aaPredicted RBP10.68□□□□□ -0.7
PTPN2-209ENST00000589444 NCBP3Q53F19 620 aaKnown RBP10.63□□□□□ -0.71
PTPN2-209ENST00000589444 DAXXQ9UER7 740 aaPredicted RBP10.61□□□□□ -0.71
PTPN2-209ENST00000589444 CSRNP3Q8WYN3 585 aa10.55□□□□□ -0.72
PTPN2-209ENST00000589444 KCNA4P22459 653 aa10.5□□□□□ -0.73
PTPN2-209ENST00000589444 DMRT2Q9Y5R5 561 aa10.23□□□□□ -0.77
PTPN2-209ENST00000589444 ARXQ96QS3 562 aa10.16□□□□□ -0.78
PTPN2-209ENST00000589444 SCAF1Q9H7N4 1312 aaKnown RBP10.15□□□□□ -0.78
PTPN2-209ENST00000589444 PRKCSHP14314 528 aaPredicted RBP10.14□□□□□ -0.79
PTPN2-209ENST00000589444 SLC4A1APQ9BWU0 796 aaKnown RBP10.12□□□□□ -0.79
PTPN2-209ENST00000589444 CACNB1Q02641 598 aaPredicted RBP10.09□□□□□ -0.79
PTPN2-209ENST00000589444 MAPK8IP2Q13387 824 aaPredicted RBP10.04□□□□□ -0.8
PTPN2-209ENST00000589444 TAOK2Q9UL54 1235 aa9.98□□□□□ -0.81
PTPN2-209ENST00000589444 BCANQ96GW7 911 aa9.95□□□□□ -0.82
PTPN2-209ENST00000589444 TIMELESSQ9UNS1 1208 aa9.94□□□□□ -0.82
PTPN2-209ENST00000589444 TTBK1Q5TCY1 1321 aaPredicted RBP9.91□□□□□ -0.82
PTPN2-209ENST00000589444 HOMEZQ8IX15 550 aa9.82□□□□□ -0.84
PTPN2-209ENST00000589444 TULP1O00294 542 aaPredicted RBP9.82□□□□□ -0.84
PTPN2-209ENST00000589444 APLP2Q06481 763 aa9.81□□□□□ -0.84
PTPN2-209ENST00000589444 PELP1Q8IZL8 1130 aaKnown RBP9.81□□□□□ -0.84
PTPN2-209ENST00000589444 RANGAP1P46060 587 aaPredicted RBP9.78□□□□□ -0.84
PTPN2-209ENST00000589444 PLCB2Q00722 1185 aa9.78□□□□□ -0.84
PTPN2-209ENST00000589444 TPRNQ4KMQ1 711 aa9.77□□□□□ -0.85
PTPN2-209ENST00000589444 RNF39Q9H2S5 420 aa9.76□□□□□ -0.85
PTPN2-209ENST00000589444 DCAF8L1A6NGE4 600 aa9.72□□□□□ -0.85
PTPN2-209ENST00000589444 MYT1Q01538 1121 aa9.72□□□□□ -0.85
PTPN2-209ENST00000589444 HOXD11P31277 338 aaPredicted RBP9.71□□□□□ -0.86
PTPN2-209ENST00000589444 ERICH6Q7L0X2 663 aa9.68□□□□□ -0.86
PTPN2-209ENST00000589444 C1QBPQ07021 282 aaKnown RBP9.67□□□□□ -0.86
PTPN2-209ENST00000589444 HAP1P54257 671 aaPredicted RBP9.65□□□□□ -0.87
PTPN2-209ENST00000589444 ZBTB22O15209 634 aa9.63□□□□□ -0.87
PTPN2-209ENST00000589444 GTF3C3Q9Y5Q9 886 aa9.63□□□□□ -0.87
PTPN2-209ENST00000589444 DNAJC5BQ9UF47 199 aa9.6□□□□□ -0.87
PTPN2-209ENST00000589444 PPP4R3CPQ6ZMV5 832 aa9.55□□□□□ -0.88
PTPN2-209ENST00000589444 RNF216Q9NWF9 866 aaPredicted RBP9.54□□□□□ -0.88
PTPN2-209ENST00000589444 VSIG10Q8N0Z9 540 aa9.54□□□□□ -0.88
PTPN2-209ENST00000589444 CNKSR2Q8WXI2 1034 aa9.53□□□□□ -0.88
PTPN2-209ENST00000589444 PODXL2Q9NZ53 605 aa9.49□□□□□ -0.89
PTPN2-209ENST00000589444 FKBP8Q14318 412 aa9.44□□□□□ -0.9
PTPN2-209ENST00000589444 TMEM132AQ24JP5 1023 aa9.4□□□□□ -0.9
PTPN2-209ENST00000589444 KLHL34Q8N239 644 aa9.4□□□□□ -0.9
PTPN2-209ENST00000589444 POTEHQ6S545 545 aa9.35□□□□□ -0.91
PTPN2-209ENST00000589444 NPM3O75607 178 aaKnown RBP9.35□□□□□ -0.91
PTPN2-209ENST00000589444 C14orf37Q86TY3 774 aa9.33□□□□□ -0.92
PTPN2-209ENST00000589444 NPM2Q86SE8 214 aaKnown RBP9.31□□□□□ -0.92
PTPN2-209ENST00000589444 FBXO3Q9UK99 471 aa9.29□□□□□ -0.92
PTPN2-209ENST00000589444 KDM2AQ9Y2K7 1162 aa9.28□□□□□ -0.92
PTPN2-209ENST00000589444 FOXD4L1Q9NU39 408 aa9.22□□□□□ -0.93
PTPN2-209ENST00000589444 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.22□□□□□ -0.932e-6■■□□□ 11.9
PTPN2-209ENST00000589444 FBLN2P98095 1184 aa9.17□□□□□ -0.94
PTPN2-209ENST00000589444 EIF5BO60841 1220 aaKnown RBP9.16□□□□□ -0.94
PTPN2-209ENST00000589444 DCAF8L2P0C7V8 631 aa9.11□□□□□ -0.95
PTPN2-209ENST00000589444 TRIM26Q12899 539 aaPredicted RBP9.1□□□□□ -0.95
PTPN2-209ENST00000589444 SUPT5HO00267 1087 aaKnown RBP9.07□□□□□ -0.96
PTPN2-209ENST00000589444 NBR1Q14596 966 aa8.99□□□□□ -0.97
PTPN2-209ENST00000589444 UBTFP17480 764 aaKnown RBP8.98□□□□□ -0.97
PTPN2-209ENST00000589444 HRCP23327 699 aa8.98□□□□□ -0.97
PTPN2-209ENST00000589444 DSG3P32926 999 aa8.98□□□□□ -0.97
PTPN2-209ENST00000589444 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.98□□□□□ -0.97
PTPN2-209ENST00000589444 CAPN15O75808 1086 aa8.94□□□□□ -0.98
PTPN2-209ENST00000589444 PAXIP1Q6ZW49 1069 aaPredicted RBP8.93□□□□□ -0.98
PTPN2-209ENST00000589444 BBXQ8WY36 941 aaPredicted RBP8.93□□□□□ -0.98
PTPN2-209ENST00000589444 U3KPZ7 1027 aaPredicted RBP8.93□□□□□ -0.98
PTPN2-209ENST00000589444 CFAP44Q96MT7 982 aa8.89□□□□□ -0.99
PTPN2-209ENST00000589444 SPINK5Q9NQ38 1064 aaPredicted RBP8.85□□□□□ -0.99
PTPN2-209ENST00000589444 TSHZ2Q9NRE2 1034 aa8.85□□□□□ -0.99
PTPN2-209ENST00000589444 LOC105371045A0A1W2PR82 267 aa8.85□□□□□ -0.99
PTPN2-209ENST00000589444 ATXN8OSP0DMR3 200 aa8.79□□□□□ -1
PTPN2-209ENST00000589444 PKD2Q13563 968 aa8.79□□□□□ -1
PTPN2-209ENST00000589444 DNAJC5Q9H3Z4 198 aa8.78□□□□□ -1
PTPN2-209ENST00000589444 ZNF219Q9P2Y4 722 aaPredicted RBP8.77□□□□□ -1.01
PTPN2-209ENST00000589444 CCDC9Q9Y3X0 531 aaKnown RBP8.77□□□□□ -1.01
PTPN2-209ENST00000589444 NPM1P06748 294 aaKnown RBP eCLIP8.75□□□□□ -1.01
PTPN2-209ENST00000589444 SHROOM4Q9ULL8 1493 aa8.74□□□□□ -1.01
PTPN2-209ENST00000589444 SPRYD3Q8NCJ5 442 aa8.74□□□□□ -1.01
PTPN2-209ENST00000589444 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.72□□□□□ -1.01
PTPN2-209ENST00000589444 HNRNPUL2Q1KMD3 747 aaKnown RBP8.72□□□□□ -1.01
PTPN2-209ENST00000589444 RBM42Q9BTD8 480 aaKnown RBP8.72□□□□□ -1.01
PTPN2-209ENST00000589444 PLEKHG5O94827 1062 aa8.68□□□□□ -1.02
PTPN2-209ENST00000589444 HMGB1P09429 215 aaKnown RBP8.68□□□□□ -1.02
PTPN2-209ENST00000589444 TRHP20396 242 aaPredicted RBP8.66□□□□□ -1.02
PTPN2-209ENST00000589444 CDK11BP21127 795 aaKnown RBP8.65□□□□□ -1.03
PTPN2-209ENST00000589444 CDK11AQ9UQ88 783 aaPredicted RBP8.65□□□□□ -1.03
PTPN2-209ENST00000589444 ZBTB7CA1YPR0 619 aa8.64□□□□□ -1.03
PTPN2-209ENST00000589444 ABCB7O75027 752 aa8.63□□□□□ -1.03
PTPN2-209ENST00000589444 VASPP50552 380 aaPredicted RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms