RNA–Protein interactions for RNA: ENST00000586193.5

TPM4-203, Transcript of tropomyosin 4, humanhuman

TSL 3

Gene TPM4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-203ENST00000586193 CHIC1Q5VXU3 224 aa21.79■■□□□ 1.08
TPM4-203ENST00000586193 AEBP2Q6ZN18 517 aaPredicted RBP21.34■■□□□ 1.01
TPM4-203ENST00000586193 PHF23Q9BUL5 403 aaPredicted RBP19.34■□□□□ 0.69
TPM4-203ENST00000586193 PLPPR3Q6T4P5 718 aa18.14■□□□□ 0.49
TPM4-203ENST00000586193 SENP3Q9H4L4 574 aaPredicted RBP17.85■□□□□ 0.45
TPM4-203ENST00000586193 EHMT2Q96KQ7 1210 aa17.14■□□□□ 0.33
TPM4-203ENST00000586193 ADRA2BP18089 450 aa17.06■□□□□ 0.32
TPM4-203ENST00000586193 KCNA4P22459 653 aa16.99■□□□□ 0.31
TPM4-203ENST00000586193 PPP6R1Q9UPN7 881 aa16.74■□□□□ 0.27
TPM4-203ENST00000586193 FOXD1Q16676 465 aa16.52■□□□□ 0.24
TPM4-203ENST00000586193 CSRNP3Q8WYN3 585 aa16.42■□□□□ 0.22
TPM4-203ENST00000586193 SLC4A1APQ9BWU0 796 aaKnown RBP16.34■□□□□ 0.21
TPM4-203ENST00000586193 PPP4R3CPQ6ZMV5 832 aa16.16■□□□□ 0.18
TPM4-203ENST00000586193 NCBP3Q53F19 620 aaKnown RBP15.98■□□□□ 0.15
TPM4-203ENST00000586193 PIAS4Q8N2W9 510 aaPredicted RBP15.82■□□□□ 0.12
TPM4-203ENST00000586193 NPM3O75607 178 aaKnown RBP15.81■□□□□ 0.12
TPM4-203ENST00000586193 ZBTB22O15209 634 aa15.67■□□□□ 0.1
TPM4-203ENST00000586193 SLC24A1O60721 1099 aa15.5■□□□□ 0.07
TPM4-203ENST00000586193 CNKSR2Q8WXI2 1034 aa15.44■□□□□ 0.06
TPM4-203ENST00000586193 RTN4Q9NQC3 1192 aaKnown RBP15.32■□□□□ 0.04
TPM4-203ENST00000586193 FOXD4L1Q9NU39 408 aa15.29■□□□□ 0.04
TPM4-203ENST00000586193 SCAF1Q9H7N4 1312 aaKnown RBP15.25■□□□□ 0.03
TPM4-203ENST00000586193 AMER1Q5JTC6 1135 aaPredicted RBP15.24■□□□□ 0.03
TPM4-203ENST00000586193 DNAJC5BQ9UF47 199 aa15.06■□□□□ 0
TPM4-203ENST00000586193 MAPK8IP2Q13387 824 aaPredicted RBP14.95□□□□□ -0.02
TPM4-203ENST00000586193 RNF216Q9NWF9 866 aaPredicted RBP14.87□□□□□ -0.03
TPM4-203ENST00000586193 FKBP8Q14318 412 aa14.78□□□□□ -0.04
TPM4-203ENST00000586193 MSH5O43196 834 aa14.74□□□□□ -0.05
TPM4-203ENST00000586193 SLC4A2P04920 1241 aa14.68□□□□□ -0.06
TPM4-203ENST00000586193 ATXN8OSP0DMR3 200 aa14.61□□□□□ -0.07
TPM4-203ENST00000586193 MYCNP04198 464 aaPredicted RBP14.54□□□□□ -0.08
TPM4-203ENST00000586193 HOXD11P31277 338 aaPredicted RBP14.53□□□□□ -0.08
TPM4-203ENST00000586193 DMRT2Q9Y5R5 561 aa14.43□□□□□ -0.1
TPM4-203ENST00000586193 ATF5Q9Y2D1 282 aaPredicted RBP14.17□□□□□ -0.14
TPM4-203ENST00000586193 PLCB2Q00722 1185 aa14.04□□□□□ -0.16
TPM4-203ENST00000586193 HAP1P54257 671 aaPredicted RBP13.9□□□□□ -0.18
TPM4-203ENST00000586193 SAMD1Q6SPF0 538 aaPredicted RBP13.9□□□□□ -0.18
TPM4-203ENST00000586193 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.9□□□□□ -0.189e-7■□□□□ 8.7
TPM4-203ENST00000586193 FBXO3Q9UK99 471 aa13.89□□□□□ -0.19
TPM4-203ENST00000586193 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.88□□□□□ -0.19
TPM4-203ENST00000586193 HNRNPUL2Q1KMD3 747 aaKnown RBP13.88□□□□□ -0.19
TPM4-203ENST00000586193 DCAF8L1A6NGE4 600 aa13.84□□□□□ -0.19
TPM4-203ENST00000586193 DCAF8L2P0C7V8 631 aa13.79□□□□□ -0.2
TPM4-203ENST00000586193 PRKCSHP14314 528 aaPredicted RBP13.79□□□□□ -0.2
TPM4-203ENST00000586193 U3KPZ7 1027 aaPredicted RBP13.79□□□□□ -0.2
TPM4-203ENST00000586193 BCANQ96GW7 911 aa13.78□□□□□ -0.2
TPM4-203ENST00000586193 ZNF219Q9P2Y4 722 aaPredicted RBP13.76□□□□□ -0.21
TPM4-203ENST00000586193 SPDYE4A6NLX3 237 aa13.75□□□□□ -0.21
TPM4-203ENST00000586193 VASPP50552 380 aaPredicted RBP13.72□□□□□ -0.21
TPM4-203ENST00000586193 TAOK2Q9UL54 1235 aa13.66□□□□□ -0.22
TPM4-203ENST00000586193 POTEDQ86YR6 584 aa13.65□□□□□ -0.22
TPM4-203ENST00000586193 IFNLR1Q8IU57 520 aaPredicted RBP13.65□□□□□ -0.22
TPM4-203ENST00000586193 VSIG10Q8N0Z9 540 aa13.65□□□□□ -0.22
TPM4-203ENST00000586193 PROM2Q8N271 834 aa13.62□□□□□ -0.23
TPM4-203ENST00000586193 MKRN4PQ13434 485 aaPredicted RBP13.58□□□□□ -0.24
TPM4-203ENST00000586193 PKD2Q13563 968 aa13.58□□□□□ -0.24
TPM4-203ENST00000586193 APLP2Q06481 763 aa13.48□□□□□ -0.25
TPM4-203ENST00000586193 TPRNQ4KMQ1 711 aa13.48□□□□□ -0.25
TPM4-203ENST00000586193 KDM2AQ9Y2K7 1162 aa13.46□□□□□ -0.25
TPM4-203ENST00000586193 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.43□□□□□ -0.26
TPM4-203ENST00000586193 FBLN2P98095 1184 aa13.41□□□□□ -0.26
TPM4-203ENST00000586193 BBXQ8WY36 941 aaPredicted RBP13.4□□□□□ -0.26
TPM4-203ENST00000586193 PAXIP1Q6ZW49 1069 aaPredicted RBP13.38□□□□□ -0.27
TPM4-203ENST00000586193 NPM1P06748 294 aaKnown RBP eCLIP13.35□□□□□ -0.27
TPM4-203ENST00000586193 CFAP44Q96MT7 982 aa13.35□□□□□ -0.27
TPM4-203ENST00000586193 ECM2O94769 699 aaPredicted RBP13.31□□□□□ -0.28
TPM4-203ENST00000586193 KLHL34Q8N239 644 aa13.28□□□□□ -0.28
TPM4-203ENST00000586193 SPOCK2Q92563 424 aa13.27□□□□□ -0.29
TPM4-203ENST00000586193 POLA2Q14181 598 aa13.23□□□□□ -0.29
TPM4-203ENST00000586193 TRHP20396 242 aaPredicted RBP13.22□□□□□ -0.29
TPM4-203ENST00000586193 TSHZ2Q9NRE2 1034 aa13.2□□□□□ -0.3
TPM4-203ENST00000586193 SPRYD3Q8NCJ5 442 aa13.18□□□□□ -0.3
TPM4-203ENST00000586193 RGL2O15211 777 aa13.16□□□□□ -0.3
TPM4-203ENST00000586193 SPINK5Q9NQ38 1064 aaPredicted RBP13.14□□□□□ -0.31
TPM4-203ENST00000586193 PLCD3Q8N3E9 789 aa13.04□□□□□ -0.32
TPM4-203ENST00000586193 CAPN15O75808 1086 aa13.02□□□□□ -0.33
TPM4-203ENST00000586193 CHGAP10645 457 aaKnown RBP13.02□□□□□ -0.33
TPM4-203ENST00000586193 STAG3Q9UJ98 1225 aa13.02□□□□□ -0.33
TPM4-203ENST00000586193 NBR1Q14596 966 aa13□□□□□ -0.33
TPM4-203ENST00000586193 ZBTB12Q9Y330 459 aaPredicted RBP12.98□□□□□ -0.33
TPM4-203ENST00000586193 MIER1Q8N108 512 aa12.95□□□□□ -0.34
TPM4-203ENST00000586193 TIMELESSQ9UNS1 1208 aa12.95□□□□□ -0.34
TPM4-203ENST00000586193 DNAJC5Q9H3Z4 198 aa12.94□□□□□ -0.34
TPM4-203ENST00000586193 CIZ1Q9ULV3 898 aaPredicted RBP12.94□□□□□ -0.34
TPM4-203ENST00000586193 TULP1O00294 542 aaPredicted RBP12.92□□□□□ -0.34
TPM4-203ENST00000586193 ZNF692Q9BU19 519 aaPredicted RBP12.91□□□□□ -0.34
TPM4-203ENST00000586193 ABCB7O75027 752 aa12.9□□□□□ -0.34
TPM4-203ENST00000586193 GTF3C3Q9Y5Q9 886 aa12.84□□□□□ -0.35
TPM4-203ENST00000586193 HS6ST3Q8IZP7 471 aa12.81□□□□□ -0.36
TPM4-203ENST00000586193 PABPN1Q86U42 306 aaKnown RBP eCLIP12.79□□□□□ -0.36
TPM4-203ENST00000586193 RNF39Q9H2S5 420 aa12.77□□□□□ -0.37
TPM4-203ENST00000586193 SSUH2Q9Y2M2 353 aa12.77□□□□□ -0.37
TPM4-203ENST00000586193 SPDYE2BA6NHP3 402 aa12.75□□□□□ -0.37
TPM4-203ENST00000586193 SPDYE6P0CI01 402 aa12.75□□□□□ -0.37
TPM4-203ENST00000586193 SPDYE2Q495Y8 402 aa12.75□□□□□ -0.37
TPM4-203ENST00000586193 TRIM41Q8WV44 630 aa12.74□□□□□ -0.37
TPM4-203ENST00000586193 ZBTB47Q9UFB7 747 aaPredicted RBP12.74□□□□□ -0.37
TPM4-203ENST00000586193 PLEKHG5O94827 1062 aa12.73□□□□□ -0.37
TPM4-203ENST00000586193 OSCARQ8IYS5 282 aa12.73□□□□□ -0.37
TPM4-203ENST00000586193 NKX1-1Q15270 411 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms