RNA–Protein interactions for RNA: ENST00000562806.1

CHD9-207, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 3

Gene CHD9, Length 400 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-207ENST00000562806 AEBP2Q6ZN18 517 aaPredicted RBP15.81■□□□□ 0.12
CHD9-207ENST00000562806 CHIC1Q5VXU3 224 aa15.58■□□□□ 0.08
CHD9-207ENST00000562806 PHF23Q9BUL5 403 aaPredicted RBP13.61□□□□□ -0.23
CHD9-207ENST00000562806 SENP3Q9H4L4 574 aaPredicted RBP13.6□□□□□ -0.23
CHD9-207ENST00000562806 PLPPR3Q6T4P5 718 aa12.73□□□□□ -0.37
CHD9-207ENST00000562806 FOXD1Q16676 465 aa12.49□□□□□ -0.41
CHD9-207ENST00000562806 ADRA2BP18089 450 aa11.99□□□□□ -0.49
CHD9-207ENST00000562806 PPP6R1Q9UPN7 881 aa11.98□□□□□ -0.49
CHD9-207ENST00000562806 PIAS4Q8N2W9 510 aaPredicted RBP11.84□□□□□ -0.51
CHD9-207ENST00000562806 MSH5O43196 834 aa11.66□□□□□ -0.54
CHD9-207ENST00000562806 SCAF1Q9H7N4 1312 aaKnown RBP11.19□□□□□ -0.62
CHD9-207ENST00000562806 PPP4R3CPQ6ZMV5 832 aa11.16□□□□□ -0.62
CHD9-207ENST00000562806 NCBP3Q53F19 620 aaKnown RBP10.99□□□□□ -0.65
CHD9-207ENST00000562806 CNKSR2Q8WXI2 1034 aa10.9□□□□□ -0.66
CHD9-207ENST00000562806 KCNA4P22459 653 aa10.84□□□□□ -0.67
CHD9-207ENST00000562806 MAPK8IP2Q13387 824 aaPredicted RBP10.84□□□□□ -0.67
CHD9-207ENST00000562806 DMRT2Q9Y5R5 561 aa10.82□□□□□ -0.68
CHD9-207ENST00000562806 NPM3O75607 178 aaKnown RBP10.68□□□□□ -0.7
CHD9-207ENST00000562806 RNF216Q9NWF9 866 aaPredicted RBP10.68□□□□□ -0.7
CHD9-207ENST00000562806 HOXD11P31277 338 aaPredicted RBP10.61□□□□□ -0.71
CHD9-207ENST00000562806 DNAJC5BQ9UF47 199 aa10.51□□□□□ -0.73
CHD9-207ENST00000562806 POTEDQ86YR6 584 aa10.45□□□□□ -0.74
CHD9-207ENST00000562806 SLC4A1APQ9BWU0 796 aaKnown RBP10.41□□□□□ -0.74
CHD9-207ENST00000562806 DCAF8L1A6NGE4 600 aa10.31□□□□□ -0.76
CHD9-207ENST00000562806 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.12□□□□□ -0.79
CHD9-207ENST00000562806 FOXD4L1Q9NU39 408 aa10.08□□□□□ -0.8
CHD9-207ENST00000562806 SLC4A2P04920 1241 aa10.04□□□□□ -0.8
CHD9-207ENST00000562806 EHMT2Q96KQ7 1210 aa10.04□□□□□ -0.8
CHD9-207ENST00000562806 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.96□□□□□ -0.82
CHD9-207ENST00000562806 HNRNPUL2Q1KMD3 747 aaKnown RBP9.96□□□□□ -0.82
CHD9-207ENST00000562806 MYCNP04198 464 aaPredicted RBP9.95□□□□□ -0.82
CHD9-207ENST00000562806 CSRNP3Q8WYN3 585 aa9.94□□□□□ -0.82
CHD9-207ENST00000562806 ZBTB22O15209 634 aa9.92□□□□□ -0.82
CHD9-207ENST00000562806 RNF39Q9H2S5 420 aa9.92□□□□□ -0.82
CHD9-207ENST00000562806 APLP2Q06481 763 aa9.89□□□□□ -0.83
CHD9-207ENST00000562806 C1QBPQ07021 282 aaKnown RBP9.88□□□□□ -0.83
CHD9-207ENST00000562806 SAMD1Q6SPF0 538 aaPredicted RBP9.88□□□□□ -0.83
CHD9-207ENST00000562806 U3KPZ7 1027 aaPredicted RBP9.88□□□□□ -0.83
CHD9-207ENST00000562806 ATXN8OSP0DMR3 200 aa9.81□□□□□ -0.84
CHD9-207ENST00000562806 CACNB1Q02641 598 aaPredicted RBP9.66□□□□□ -0.86
CHD9-207ENST00000562806 ZNF219Q9P2Y4 722 aaPredicted RBP9.64□□□□□ -0.87
CHD9-207ENST00000562806 CAPN15O75808 1086 aa9.61□□□□□ -0.87
CHD9-207ENST00000562806 SPINK5Q9NQ38 1064 aaPredicted RBP9.56□□□□□ -0.88
CHD9-207ENST00000562806 TRHP20396 242 aaPredicted RBP9.54□□□□□ -0.88
CHD9-207ENST00000562806 ATF5Q9Y2D1 282 aaPredicted RBP9.51□□□□□ -0.89
CHD9-207ENST00000562806 DSG3P32926 999 aa9.42□□□□□ -0.9
CHD9-207ENST00000562806 POLA2Q14181 598 aa9.4□□□□□ -0.9
CHD9-207ENST00000562806 ZBTB12Q9Y330 459 aaPredicted RBP9.4□□□□□ -0.9
CHD9-207ENST00000562806 ABCB7O75027 752 aa9.35□□□□□ -0.91
CHD9-207ENST00000562806 FBLN2P98095 1184 aa9.32□□□□□ -0.92
CHD9-207ENST00000562806 MKRN4PQ13434 485 aaPredicted RBP9.14□□□□□ -0.95
CHD9-207ENST00000562806 RBM42Q9BTD8 480 aaKnown RBP9.11□□□□□ -0.95
CHD9-207ENST00000562806 SPDYE2BA6NHP3 402 aa9.08□□□□□ -0.96
CHD9-207ENST00000562806 SPDYE6P0CI01 402 aa9.08□□□□□ -0.96
CHD9-207ENST00000562806 SPDYE2Q495Y8 402 aa9.08□□□□□ -0.96
CHD9-207ENST00000562806 OSCARQ8IYS5 282 aa9.04□□□□□ -0.96
CHD9-207ENST00000562806 SPDYE4A6NLX3 237 aa9.03□□□□□ -0.96
CHD9-207ENST00000562806 FKBP8Q14318 412 aa9.01□□□□□ -0.97
CHD9-207ENST00000562806 ZNF692Q9BU19 519 aaPredicted RBP9.01□□□□□ -0.97
CHD9-207ENST00000562806 AKT1S1Q96B36 256 aa8.96□□□□□ -0.98
CHD9-207ENST00000562806 SSUH2Q9Y2M2 353 aa8.96□□□□□ -0.98
CHD9-207ENST00000562806 PROM2Q8N271 834 aa8.88□□□□□ -0.99
CHD9-207ENST00000562806 PABPN1Q86U42 306 aaKnown RBP eCLIP8.86□□□□□ -0.99
CHD9-207ENST00000562806 STAG3Q9UJ98 1225 aa8.85□□□□□ -0.99
CHD9-207ENST00000562806 FBXO3Q9UK99 471 aa8.84□□□□□ -0.99
CHD9-207ENST00000562806 SPDYE1Q8NFV5 336 aaPredicted RBP8.82□□□□□ -1
CHD9-207ENST00000562806 REM2Q8IYK8 340 aaPredicted RBP8.8□□□□□ -1
CHD9-207ENST00000562806 CLEC11AQ9Y240 323 aa8.7□□□□□ -1.02
CHD9-207ENST00000562806 PITPNM1O00562 1244 aa8.67□□□□□ -1.02
CHD9-207ENST00000562806 PLEKHG5O94827 1062 aa8.67□□□□□ -1.02
CHD9-207ENST00000562806 PRR29P0C7W0 189 aa8.67□□□□□ -1.02
CHD9-207ENST00000562806 CHRDL2Q6WN34 429 aa8.62□□□□□ -1.03
CHD9-207ENST00000562806 VASPP50552 380 aaPredicted RBP8.61□□□□□ -1.03
CHD9-207ENST00000562806 ZBTB47Q9UFB7 747 aaPredicted RBP8.6□□□□□ -1.03
CHD9-207ENST00000562806 MIER1Q8N108 512 aa8.59□□□□□ -1.03
CHD9-207ENST00000562806 PLCD3Q8N3E9 789 aa8.59□□□□□ -1.03
CHD9-207ENST00000562806 FXR2P51116 673 aaKnown RBP eCLIP8.55□□□□□ -1.04
CHD9-207ENST00000562806 NPM1P06748 294 aaKnown RBP eCLIP8.49□□□□□ -1.05
CHD9-207ENST00000562806 KLHL34Q8N239 644 aa8.49□□□□□ -1.05
CHD9-207ENST00000562806 PIP4P2Q8N4L2 257 aa8.49□□□□□ -1.05
CHD9-207ENST00000562806 CREBZFQ9NS37 354 aa8.49□□□□□ -1.05
CHD9-207ENST00000562806 PRKAR2AP13861 404 aaKnown RBP8.48□□□□□ -1.05
CHD9-207ENST00000562806 IFNLR1Q8IU57 520 aaPredicted RBP8.44□□□□□ -1.06
CHD9-207ENST00000562806 SPOCK2Q92563 424 aa8.43□□□□□ -1.06
CHD9-207ENST00000562806 FARP1Q9Y4F1 1045 aaPredicted RBP8.43□□□□□ -1.06
CHD9-207ENST00000562806 CHADLQ6NUI6 762 aa8.41□□□□□ -1.06
CHD9-207ENST00000562806 MNX1P50219 401 aaPredicted RBP8.39□□□□□ -1.07
CHD9-207ENST00000562806 PAK3O75914 559 aaPredicted RBP8.35□□□□□ -1.07
CHD9-207ENST00000562806 AMER1Q5JTC6 1135 aaPredicted RBP8.35□□□□□ -1.07
CHD9-207ENST00000562806 GSE1Q14687 1217 aa8.34□□□□□ -1.07
CHD9-207ENST00000562806 FAM212AQ96EL1 285 aa8.33□□□□□ -1.08
CHD9-207ENST00000562806 NUBP1P53384 320 aa8.32□□□□□ -1.08
CHD9-207ENST00000562806 POTEHQ6S545 545 aa8.32□□□□□ -1.08
CHD9-207ENST00000562806 TRIM41Q8WV44 630 aa8.31□□□□□ -1.08
CHD9-207ENST00000562806 DCAF8Q5TAQ9 597 aa8.28□□□□□ -1.08
CHD9-207ENST00000562806 C19orf67A6NJJ6 358 aa8.26□□□□□ -1.09
CHD9-207ENST00000562806 CIZ1Q9ULV3 898 aaPredicted RBP8.26□□□□□ -1.09
CHD9-207ENST00000562806 CD44P16070 742 aaKnown RBP8.25□□□□□ -1.09
CHD9-207ENST00000562806 CLCN6P51797 869 aa8.25□□□□□ -1.09
CHD9-207ENST00000562806 HAX1O00165 279 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms