RNA–Protein interactions for RNA: ENST00000559037.1

CASC4-207, Transcript of cancer susceptibility 4, humanhuman

TSL 3

Gene CASC4, Length 680 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-207ENST00000559037 AEBP2Q6ZN18 517 aaPredicted RBP23.58■■□□□ 1.37
CASC4-207ENST00000559037 CHIC1Q5VXU3 224 aa23.07■■□□□ 1.28
CASC4-207ENST00000559037 SENP3Q9H4L4 574 aaPredicted RBP20.21■□□□□ 0.83
CASC4-207ENST00000559037 PHF23Q9BUL5 403 aaPredicted RBP20.17■□□□□ 0.82
CASC4-207ENST00000559037 PLPPR3Q6T4P5 718 aa18.75■□□□□ 0.59
CASC4-207ENST00000559037 FOXD1Q16676 465 aa18.64■□□□□ 0.57
CASC4-207ENST00000559037 ADRA2BP18089 450 aa17.79■□□□□ 0.44
CASC4-207ENST00000559037 PPP6R1Q9UPN7 881 aa17.79■□□□□ 0.44
CASC4-207ENST00000559037 PIAS4Q8N2W9 510 aaPredicted RBP17.6■□□□□ 0.41
CASC4-207ENST00000559037 MSH5O43196 834 aa17.38■□□□□ 0.37
CASC4-207ENST00000559037 POTEDQ86YR6 584 aa16.9■□□□□ 0.3
CASC4-207ENST00000559037 SCAF1Q9H7N4 1312 aaKnown RBP16.49■□□□□ 0.23
CASC4-207ENST00000559037 PPP4R3CPQ6ZMV5 832 aa16.43■□□□□ 0.22
CASC4-207ENST00000559037 MAPK8IP2Q13387 824 aaPredicted RBP16.12■□□□□ 0.17
CASC4-207ENST00000559037 NCBP3Q53F19 620 aaKnown RBP16.09■□□□□ 0.17
CASC4-207ENST00000559037 DMRT2Q9Y5R5 561 aa16.08■□□□□ 0.16
CASC4-207ENST00000559037 CNKSR2Q8WXI2 1034 aa16.06■□□□□ 0.16
CASC4-207ENST00000559037 KCNA4P22459 653 aa15.89■□□□□ 0.13
CASC4-207ENST00000559037 RNF216Q9NWF9 866 aaPredicted RBP15.78■□□□□ 0.12
CASC4-207ENST00000559037 NPM3O75607 178 aaKnown RBP15.73■□□□□ 0.11
CASC4-207ENST00000559037 HOXD11P31277 338 aaPredicted RBP15.73■□□□□ 0.11
CASC4-207ENST00000559037 DNAJC5BQ9UF47 199 aa15.47■□□□□ 0.07
CASC4-207ENST00000559037 DCAF8L1A6NGE4 600 aa15.3■□□□□ 0.04
CASC4-207ENST00000559037 SLC4A1APQ9BWU0 796 aaKnown RBP15.18■□□□□ 0.02
CASC4-207ENST00000559037 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.95□□□□□ -0.021e-6■■■□□ 16.9
CASC4-207ENST00000559037 CACNB1Q02641 598 aaPredicted RBP14.87□□□□□ -0.03
CASC4-207ENST00000559037 RNF39Q9H2S5 420 aa14.85□□□□□ -0.03
CASC4-207ENST00000559037 SLC4A2P04920 1241 aa14.84□□□□□ -0.03
CASC4-207ENST00000559037 FOXD4L1Q9NU39 408 aa14.75□□□□□ -0.05
CASC4-207ENST00000559037 C1QBPQ07021 282 aaKnown RBP14.69□□□□□ -0.06
CASC4-207ENST00000559037 U3KPZ7 1027 aaPredicted RBP14.66□□□□□ -0.06
CASC4-207ENST00000559037 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.63□□□□□ -0.07
CASC4-207ENST00000559037 HNRNPUL2Q1KMD3 747 aaKnown RBP14.63□□□□□ -0.07
CASC4-207ENST00000559037 MYCNP04198 464 aaPredicted RBP14.62□□□□□ -0.07
CASC4-207ENST00000559037 ZBTB22O15209 634 aa14.57□□□□□ -0.08
CASC4-207ENST00000559037 APLP2Q06481 763 aa14.54□□□□□ -0.08
CASC4-207ENST00000559037 EHMT2Q96KQ7 1210 aa14.54□□□□□ -0.08
CASC4-207ENST00000559037 SAMD1Q6SPF0 538 aaPredicted RBP14.53□□□□□ -0.08
CASC4-207ENST00000559037 CSRNP3Q8WYN3 585 aa14.45□□□□□ -0.1
CASC4-207ENST00000559037 ATXN8OSP0DMR3 200 aa14.33□□□□□ -0.12
CASC4-207ENST00000559037 ZNF219Q9P2Y4 722 aaPredicted RBP14.26□□□□□ -0.13
CASC4-207ENST00000559037 CAPN15O75808 1086 aa14.24□□□□□ -0.13
CASC4-207ENST00000559037 SPINK5Q9NQ38 1064 aaPredicted RBP14.23□□□□□ -0.13
CASC4-207ENST00000559037 TRHP20396 242 aaPredicted RBP14.11□□□□□ -0.15
CASC4-207ENST00000559037 ATF5Q9Y2D1 282 aaPredicted RBP14.06□□□□□ -0.16
CASC4-207ENST00000559037 DSG3P32926 999 aa14.03□□□□□ -0.16
CASC4-207ENST00000559037 ABCB7O75027 752 aa13.89□□□□□ -0.19
CASC4-207ENST00000559037 POLA2Q14181 598 aa13.89□□□□□ -0.19
CASC4-207ENST00000559037 ZBTB12Q9Y330 459 aaPredicted RBP13.84□□□□□ -0.19
CASC4-207ENST00000559037 FBLN2P98095 1184 aa13.67□□□□□ -0.22
CASC4-207ENST00000559037 RBM42Q9BTD8 480 aaKnown RBP13.51□□□□□ -0.25
CASC4-207ENST00000559037 MKRN4PQ13434 485 aaPredicted RBP13.49□□□□□ -0.25
CASC4-207ENST00000559037 OSCARQ8IYS5 282 aa13.41□□□□□ -0.26
CASC4-207ENST00000559037 SPDYE2BA6NHP3 402 aa13.39□□□□□ -0.27
CASC4-207ENST00000559037 SPDYE6P0CI01 402 aa13.39□□□□□ -0.27
CASC4-207ENST00000559037 SPDYE2Q495Y8 402 aa13.39□□□□□ -0.27
CASC4-207ENST00000559037 AKT1S1Q96B36 256 aa13.27□□□□□ -0.29
CASC4-207ENST00000559037 ZNF692Q9BU19 519 aaPredicted RBP13.25□□□□□ -0.29
CASC4-207ENST00000559037 POTEHQ6S545 545 aa13.24□□□□□ -0.29
CASC4-207ENST00000559037 SSUH2Q9Y2M2 353 aa13.23□□□□□ -0.29
CASC4-207ENST00000559037 SPDYE4A6NLX3 237 aa13.21□□□□□ -0.29
CASC4-207ENST00000559037 FKBP8Q14318 412 aa13.09□□□□□ -0.31
CASC4-207ENST00000559037 REM2Q8IYK8 340 aaPredicted RBP13.06□□□□□ -0.32
CASC4-207ENST00000559037 PABPN1Q86U42 306 aaKnown RBP eCLIP13.05□□□□□ -0.32
CASC4-207ENST00000559037 PROM2Q8N271 834 aa13.03□□□□□ -0.32
CASC4-207ENST00000559037 SPDYE1Q8NFV5 336 aaPredicted RBP13.01□□□□□ -0.33
CASC4-207ENST00000559037 CHRDL2Q6WN34 429 aa12.95□□□□□ -0.34
CASC4-207ENST00000559037 STAG3Q9UJ98 1225 aa12.95□□□□□ -0.34
CASC4-207ENST00000559037 PITPNM1O00562 1244 aa12.91□□□□□ -0.34
CASC4-207ENST00000559037 CLEC11AQ9Y240 323 aa12.84□□□□□ -0.35
CASC4-207ENST00000559037 FBXO3Q9UK99 471 aa12.81□□□□□ -0.36
CASC4-207ENST00000559037 PRR29P0C7W0 189 aa12.77□□□□□ -0.37
CASC4-207ENST00000559037 FXR2P51116 673 aaKnown RBP eCLIP12.72□□□□□ -0.37
CASC4-207ENST00000559037 PIP4P2Q8N4L2 257 aa12.66□□□□□ -0.38
CASC4-207ENST00000559037 PLEKHG5O94827 1062 aa12.61□□□□□ -0.39
CASC4-207ENST00000559037 PRKAR2AP13861 404 aaKnown RBP12.58□□□□□ -0.4
CASC4-207ENST00000559037 VASPP50552 380 aaPredicted RBP12.54□□□□□ -0.4
CASC4-207ENST00000559037 CREBZFQ9NS37 354 aa12.54□□□□□ -0.4
CASC4-207ENST00000559037 MIER1Q8N108 512 aa12.53□□□□□ -0.4
CASC4-207ENST00000559037 ZBTB47Q9UFB7 747 aaPredicted RBP12.53□□□□□ -0.4
CASC4-207ENST00000559037 PLCD3Q8N3E9 789 aa12.52□□□□□ -0.41
CASC4-207ENST00000559037 CHADLQ6NUI6 762 aa12.48□□□□□ -0.41
CASC4-207ENST00000559037 FARP1Q9Y4F1 1045 aaPredicted RBP12.46□□□□□ -0.41
CASC4-207ENST00000559037 NPM1P06748 294 aaKnown RBP eCLIP12.45□□□□□ -0.42
CASC4-207ENST00000559037 SP7Q8TDD2 431 aaPredicted RBP12.43□□□□□ -0.42
CASC4-207ENST00000559037 MNX1P50219 401 aaPredicted RBP12.41□□□□□ -0.42
CASC4-207ENST00000559037 HAX1O00165 279 aa12.39□□□□□ -0.43
CASC4-207ENST00000559037 KLHL34Q8N239 644 aa12.32□□□□□ -0.44
CASC4-207ENST00000559037 IFNLR1Q8IU57 520 aaPredicted RBP12.3□□□□□ -0.44
CASC4-207ENST00000559037 C19orf67A6NJJ6 358 aa12.29□□□□□ -0.44
CASC4-207ENST00000559037 EVX2Q03828 476 aa12.29□□□□□ -0.44
CASC4-207ENST00000559037 PAK3O75914 559 aaPredicted RBP12.27□□□□□ -0.45
CASC4-207ENST00000559037 CD44P16070 742 aaKnown RBP12.24□□□□□ -0.45
CASC4-207ENST00000559037 SPOCK2Q92563 424 aa12.24□□□□□ -0.45
CASC4-207ENST00000559037 NUBP1P53384 320 aa12.22□□□□□ -0.45
CASC4-207ENST00000559037 FAM212AQ96EL1 285 aa12.2□□□□□ -0.46
CASC4-207ENST00000559037 CLCN6P51797 869 aa12.17□□□□□ -0.46
CASC4-207ENST00000559037 GSE1Q14687 1217 aa12.15□□□□□ -0.46
CASC4-207ENST00000559037 RASEFQ8IZ41 740 aa12.15□□□□□ -0.46
CASC4-207ENST00000559037 ZRANB1Q9UGI0 708 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms