RNA–Protein interactions for RNA: ENST00000556138.1

LINC01550-205, Transcript of long intergenic non-protein coding RNA 1550, humanhuman

TSL 4

Gene LINC01550, Length 538 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01550-205ENST00000556138 AEBP2Q6ZN18 517 aaPredicted RBP22.49■■□□□ 1.19
LINC01550-205ENST00000556138 CHIC1Q5VXU3 224 aa21.71■■□□□ 1.07
LINC01550-205ENST00000556138 PHF23Q9BUL5 403 aaPredicted RBP19.14■□□□□ 0.65
LINC01550-205ENST00000556138 SENP3Q9H4L4 574 aaPredicted RBP18.98■□□□□ 0.63
LINC01550-205ENST00000556138 FOXD1Q16676 465 aa17.72■□□□□ 0.43
LINC01550-205ENST00000556138 PLPPR3Q6T4P5 718 aa17.49■□□□□ 0.39
LINC01550-205ENST00000556138 PPP6R1Q9UPN7 881 aa16.96■□□□□ 0.31
LINC01550-205ENST00000556138 ADRA2BP18089 450 aa16.91■□□□□ 0.3
LINC01550-205ENST00000556138 PIAS4Q8N2W9 510 aaPredicted RBP16.62■□□□□ 0.25
LINC01550-205ENST00000556138 MSH5O43196 834 aa16.3■□□□□ 0.2
LINC01550-205ENST00000556138 PPP4R3CPQ6ZMV5 832 aa15.44■□□□□ 0.06
LINC01550-205ENST00000556138 MAPK8IP2Q13387 824 aaPredicted RBP15.42■□□□□ 0.06
LINC01550-205ENST00000556138 SCAF1Q9H7N4 1312 aaKnown RBP15.31■□□□□ 0.04
LINC01550-205ENST00000556138 POTEDQ86YR6 584 aa15.27■□□□□ 0.04
LINC01550-205ENST00000556138 DMRT2Q9Y5R5 561 aa15.15■□□□□ 0.02
LINC01550-205ENST00000556138 CNKSR2Q8WXI2 1034 aa15□□□□□ -0.01
LINC01550-205ENST00000556138 KCNA4P22459 653 aa14.92□□□□□ -0.02
LINC01550-205ENST00000556138 NCBP3Q53F19 620 aaKnown RBP14.88□□□□□ -0.03
LINC01550-205ENST00000556138 NPM3O75607 178 aaKnown RBP14.78□□□□□ -0.04
LINC01550-205ENST00000556138 HOXD11P31277 338 aaPredicted RBP14.77□□□□□ -0.05
LINC01550-205ENST00000556138 RNF216Q9NWF9 866 aaPredicted RBP14.75□□□□□ -0.05
LINC01550-205ENST00000556138 DCAF8L1A6NGE4 600 aa14.5□□□□□ -0.09
LINC01550-205ENST00000556138 DNAJC5BQ9UF47 199 aa14.3□□□□□ -0.12
LINC01550-205ENST00000556138 SLC4A1APQ9BWU0 796 aaKnown RBP14.11□□□□□ -0.15
LINC01550-205ENST00000556138 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.05□□□□□ -0.16
LINC01550-205ENST00000556138 SLC4A2P04920 1241 aa14.03□□□□□ -0.16
LINC01550-205ENST00000556138 RNF39Q9H2S5 420 aa14.02□□□□□ -0.17
LINC01550-205ENST00000556138 U3KPZ7 1027 aaPredicted RBP13.86□□□□□ -0.19
LINC01550-205ENST00000556138 C1QBPQ07021 282 aaKnown RBP13.78□□□□□ -0.2
LINC01550-205ENST00000556138 ZBTB22O15209 634 aa13.77□□□□□ -0.21
LINC01550-205ENST00000556138 CACNB1Q02641 598 aaPredicted RBP13.76□□□□□ -0.21
LINC01550-205ENST00000556138 FOXD4L1Q9NU39 408 aa13.72□□□□□ -0.21
LINC01550-205ENST00000556138 MYCNP04198 464 aaPredicted RBP13.6□□□□□ -0.23
LINC01550-205ENST00000556138 EHMT2Q96KQ7 1210 aa13.56□□□□□ -0.24
LINC01550-205ENST00000556138 SPINK5Q9NQ38 1064 aaPredicted RBP13.56□□□□□ -0.24
LINC01550-205ENST00000556138 CSRNP3Q8WYN3 585 aa13.5□□□□□ -0.25
LINC01550-205ENST00000556138 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.48□□□□□ -0.25
LINC01550-205ENST00000556138 HNRNPUL2Q1KMD3 747 aaKnown RBP13.48□□□□□ -0.25
LINC01550-205ENST00000556138 SAMD1Q6SPF0 538 aaPredicted RBP13.46□□□□□ -0.25
LINC01550-205ENST00000556138 CAPN15O75808 1086 aa13.44□□□□□ -0.26
LINC01550-205ENST00000556138 ATF5Q9Y2D1 282 aaPredicted RBP13.37□□□□□ -0.27
LINC01550-205ENST00000556138 TRHP20396 242 aaPredicted RBP13.35□□□□□ -0.27
LINC01550-205ENST00000556138 APLP2Q06481 763 aa13.35□□□□□ -0.27
LINC01550-205ENST00000556138 DSG3P32926 999 aa13.29□□□□□ -0.28
LINC01550-205ENST00000556138 ZNF219Q9P2Y4 722 aaPredicted RBP13.28□□□□□ -0.28
LINC01550-205ENST00000556138 ABCB7O75027 752 aa13.23□□□□□ -0.29
LINC01550-205ENST00000556138 ATXN8OSP0DMR3 200 aa13.2□□□□□ -0.3
LINC01550-205ENST00000556138 POLA2Q14181 598 aa13.09□□□□□ -0.31
LINC01550-205ENST00000556138 MKRN4PQ13434 485 aaPredicted RBP12.76□□□□□ -0.37
LINC01550-205ENST00000556138 ZBTB12Q9Y330 459 aaPredicted RBP12.76□□□□□ -0.37
LINC01550-205ENST00000556138 OSCARQ8IYS5 282 aa12.69□□□□□ -0.38
LINC01550-205ENST00000556138 FBLN2P98095 1184 aa12.67□□□□□ -0.38
LINC01550-205ENST00000556138 RBM42Q9BTD8 480 aaKnown RBP12.57□□□□□ -0.4
LINC01550-205ENST00000556138 SPDYE2BA6NHP3 402 aa12.46□□□□□ -0.41
LINC01550-205ENST00000556138 SPDYE6P0CI01 402 aa12.46□□□□□ -0.41
LINC01550-205ENST00000556138 SPDYE2Q495Y8 402 aa12.46□□□□□ -0.41
LINC01550-205ENST00000556138 AKT1S1Q96B36 256 aa12.41□□□□□ -0.42
LINC01550-205ENST00000556138 ZNF692Q9BU19 519 aaPredicted RBP12.39□□□□□ -0.43
LINC01550-205ENST00000556138 SSUH2Q9Y2M2 353 aa12.39□□□□□ -0.43
LINC01550-205ENST00000556138 REM2Q8IYK8 340 aaPredicted RBP12.34□□□□□ -0.43
LINC01550-205ENST00000556138 SPDYE4A6NLX3 237 aa12.31□□□□□ -0.44
LINC01550-205ENST00000556138 PABPN1Q86U42 306 aaKnown RBP eCLIP12.25□□□□□ -0.45
LINC01550-205ENST00000556138 PITPNM1O00562 1244 aa12.22□□□□□ -0.45
LINC01550-205ENST00000556138 CHRDL2Q6WN34 429 aa12.19□□□□□ -0.46
LINC01550-205ENST00000556138 FKBP8Q14318 412 aa12.18□□□□□ -0.46
LINC01550-205ENST00000556138 SPDYE1Q8NFV5 336 aaPredicted RBP12.12□□□□□ -0.47
LINC01550-205ENST00000556138 CLEC11AQ9Y240 323 aa12.12□□□□□ -0.47
LINC01550-205ENST00000556138 PROM2Q8N271 834 aa12.11□□□□□ -0.47
LINC01550-205ENST00000556138 POTEHQ6S545 545 aa12.02□□□□□ -0.49
LINC01550-205ENST00000556138 PIP4P2Q8N4L2 257 aa12.02□□□□□ -0.49
LINC01550-205ENST00000556138 FXR2P51116 673 aaKnown RBP eCLIP12.01□□□□□ -0.49
LINC01550-205ENST00000556138 PRR29P0C7W0 189 aa11.96□□□□□ -0.49
LINC01550-205ENST00000556138 STAG3Q9UJ98 1225 aa11.92□□□□□ -0.5
LINC01550-205ENST00000556138 CHADLQ6NUI6 762 aa11.91□□□□□ -0.5
LINC01550-205ENST00000556138 PRKAR2AP13861 404 aaKnown RBP11.89□□□□□ -0.51
LINC01550-205ENST00000556138 CREBZFQ9NS37 354 aa11.83□□□□□ -0.52
LINC01550-205ENST00000556138 FARP1Q9Y4F1 1045 aaPredicted RBP11.71□□□□□ -0.53
LINC01550-205ENST00000556138 MNX1P50219 401 aaPredicted RBP11.7□□□□□ -0.54
LINC01550-205ENST00000556138 FBXO3Q9UK99 471 aa11.69□□□□□ -0.54
LINC01550-205ENST00000556138 MIER1Q8N108 512 aa11.67□□□□□ -0.54
LINC01550-205ENST00000556138 HAX1O00165 279 aa11.65□□□□□ -0.54
LINC01550-205ENST00000556138 EVX2Q03828 476 aa11.64□□□□□ -0.55
LINC01550-205ENST00000556138 PLCD3Q8N3E9 789 aa11.63□□□□□ -0.55
LINC01550-205ENST00000556138 VASPP50552 380 aaPredicted RBP11.62□□□□□ -0.55
LINC01550-205ENST00000556138 C19orf67A6NJJ6 358 aa11.6□□□□□ -0.55
LINC01550-205ENST00000556138 PLEKHG5O94827 1062 aa11.54□□□□□ -0.56
LINC01550-205ENST00000556138 CD44P16070 742 aaKnown RBP11.53□□□□□ -0.56
LINC01550-205ENST00000556138 NPM1P06748 294 aaKnown RBP eCLIP11.52□□□□□ -0.57
LINC01550-205ENST00000556138 IFNLR1Q8IU57 520 aaPredicted RBP11.49□□□□□ -0.57
LINC01550-205ENST00000556138 SP7Q8TDD2 431 aaPredicted RBP11.47□□□□□ -0.57
LINC01550-205ENST00000556138 NUBP1P53384 320 aa11.45□□□□□ -0.58
LINC01550-205ENST00000556138 RASEFQ8IZ41 740 aa11.45□□□□□ -0.58
LINC01550-205ENST00000556138 ZRANB1Q9UGI0 708 aa11.44□□□□□ -0.58
LINC01550-205ENST00000556138 KLHL34Q8N239 644 aa11.43□□□□□ -0.58
LINC01550-205ENST00000556138 ZBTB47Q9UFB7 747 aaPredicted RBP11.43□□□□□ -0.58
LINC01550-205ENST00000556138 TSPYL2Q9H2G4 693 aaPredicted RBP11.42□□□□□ -0.58
LINC01550-205ENST00000556138 ZNF579Q8NAF0 562 aaKnown RBP11.37□□□□□ -0.59
LINC01550-205ENST00000556138 PAK3O75914 559 aaPredicted RBP11.36□□□□□ -0.59
LINC01550-205ENST00000556138 PHF12Q96QT6 1004 aa11.36□□□□□ -0.59
LINC01550-205ENST00000556138 CCDC61Q9Y6R9 512 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms