RNA–Protein interactions for RNA: ENST00000554995.1

PSEN1-211, Transcript of presenilin 1, humanhuman

TSL 2

Gene PSEN1, Length 592 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-211ENST00000554995 AEBP2Q6ZN18 517 aaPredicted RBP24.84■■□□□ 1.57
PSEN1-211ENST00000554995 CHIC1Q5VXU3 224 aa23.12■■□□□ 1.29
PSEN1-211ENST00000554995 SENP3Q9H4L4 574 aaPredicted RBP21.27■■□□□ 1
PSEN1-211ENST00000554995 PHF23Q9BUL5 403 aaPredicted RBP20.87■□□□□ 0.93
PSEN1-211ENST00000554995 POTEDQ86YR6 584 aa20.07■□□□□ 0.8
PSEN1-211ENST00000554995 FOXD1Q16676 465 aa19.96■□□□□ 0.79
PSEN1-211ENST00000554995 MSH5O43196 834 aa19■□□□□ 0.63
PSEN1-211ENST00000554995 PIAS4Q8N2W9 510 aaPredicted RBP18.39■□□□□ 0.53
PSEN1-211ENST00000554995 PPP6R1Q9UPN7 881 aa17.98■□□□□ 0.47
PSEN1-211ENST00000554995 PLPPR3Q6T4P5 718 aa17.86■□□□□ 0.45
PSEN1-211ENST00000554995 ADRA2BP18089 450 aa17.83■□□□□ 0.44
PSEN1-211ENST00000554995 CACNB1Q02641 598 aaPredicted RBP16.79■□□□□ 0.28
PSEN1-211ENST00000554995 DMRT2Q9Y5R5 561 aa16.76■□□□□ 0.27
PSEN1-211ENST00000554995 MAPK8IP2Q13387 824 aaPredicted RBP16.66■□□□□ 0.26
PSEN1-211ENST00000554995 SCAF1Q9H7N4 1312 aaKnown RBP16.28■□□□□ 0.2
PSEN1-211ENST00000554995 RNF39Q9H2S5 420 aa16.16■□□□□ 0.18
PSEN1-211ENST00000554995 KCNA4P22459 653 aa16.09■□□□□ 0.17
PSEN1-211ENST00000554995 DCAF8L1A6NGE4 600 aa15.99■□□□□ 0.15
PSEN1-211ENST00000554995 C1QBPQ07021 282 aaKnown RBP15.85■□□□□ 0.13
PSEN1-211ENST00000554995 HOXD11P31277 338 aaPredicted RBP15.81■□□□□ 0.12
PSEN1-211ENST00000554995 EHMT2Q96KQ7 1210 aa15.8■□□□□ 0.12
PSEN1-211ENST00000554995 PPP4R3CPQ6ZMV5 832 aa15.66■□□□□ 0.1
PSEN1-211ENST00000554995 POTEHQ6S545 545 aa15.53■□□□□ 0.08
PSEN1-211ENST00000554995 DNAJC5BQ9UF47 199 aa15.47■□□□□ 0.07
PSEN1-211ENST00000554995 SLC4A1APQ9BWU0 796 aaKnown RBP15.43■□□□□ 0.06
PSEN1-211ENST00000554995 RNF216Q9NWF9 866 aaPredicted RBP15.43■□□□□ 0.06
PSEN1-211ENST00000554995 NCBP3Q53F19 620 aaKnown RBP15.41■□□□□ 0.06
PSEN1-211ENST00000554995 CNKSR2Q8WXI2 1034 aa15.34■□□□□ 0.05
PSEN1-211ENST00000554995 CSRNP3Q8WYN3 585 aa15.3■□□□□ 0.04
PSEN1-211ENST00000554995 NPM3O75607 178 aaKnown RBP15.23■□□□□ 0.03
PSEN1-211ENST00000554995 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.96□□□□□ -0.01
PSEN1-211ENST00000554995 ZBTB22O15209 634 aa14.83□□□□□ -0.04
PSEN1-211ENST00000554995 DSG3P32926 999 aa14.82□□□□□ -0.04
PSEN1-211ENST00000554995 SPINK5Q9NQ38 1064 aaPredicted RBP14.67□□□□□ -0.06
PSEN1-211ENST00000554995 U3KPZ7 1027 aaPredicted RBP14.63□□□□□ -0.07
PSEN1-211ENST00000554995 CAPN15O75808 1086 aa14.62□□□□□ -0.07
PSEN1-211ENST00000554995 FOXD4L1Q9NU39 408 aa14.59□□□□□ -0.07
PSEN1-211ENST00000554995 ABCB7O75027 752 aa14.22□□□□□ -0.13
PSEN1-211ENST00000554995 SLC4A2P04920 1241 aa14.22□□□□□ -0.13
PSEN1-211ENST00000554995 CHRDL2Q6WN34 429 aa14.18□□□□□ -0.14
PSEN1-211ENST00000554995 TRHP20396 242 aaPredicted RBP14.17□□□□□ -0.14
PSEN1-211ENST00000554995 SP7Q8TDD2 431 aaPredicted RBP14.15□□□□□ -0.14
PSEN1-211ENST00000554995 ZNF219Q9P2Y4 722 aaPredicted RBP14.15□□□□□ -0.14
PSEN1-211ENST00000554995 RBM42Q9BTD8 480 aaKnown RBP14.12□□□□□ -0.15
PSEN1-211ENST00000554995 MYCNP04198 464 aaPredicted RBP14.04□□□□□ -0.16
PSEN1-211ENST00000554995 APLP2Q06481 763 aa14.04□□□□□ -0.16
PSEN1-211ENST00000554995 ATXN8OSP0DMR3 200 aa14□□□□□ -0.17
PSEN1-211ENST00000554995 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.98□□□□□ -0.17
PSEN1-211ENST00000554995 HNRNPUL2Q1KMD3 747 aaKnown RBP13.98□□□□□ -0.17
PSEN1-211ENST00000554995 SAMD1Q6SPF0 538 aaPredicted RBP13.86□□□□□ -0.19
PSEN1-211ENST00000554995 FKBP8Q14318 412 aa13.78□□□□□ -0.2
PSEN1-211ENST00000554995 RTN4Q9NQC3 1192 aaKnown RBP13.77□□□□□ -0.21
PSEN1-211ENST00000554995 AMER1Q5JTC6 1135 aaPredicted RBP13.74□□□□□ -0.21
PSEN1-211ENST00000554995 PIP4P2Q8N4L2 257 aa13.67□□□□□ -0.22
PSEN1-211ENST00000554995 ATF5Q9Y2D1 282 aaPredicted RBP13.65□□□□□ -0.22
PSEN1-211ENST00000554995 AKT1S1Q96B36 256 aa13.63□□□□□ -0.23
PSEN1-211ENST00000554995 POLA2Q14181 598 aa13.61□□□□□ -0.23
PSEN1-211ENST00000554995 HAX1O00165 279 aa13.59□□□□□ -0.23
PSEN1-211ENST00000554995 SLC24A1O60721 1099 aa13.54□□□□□ -0.24
PSEN1-211ENST00000554995 REM2Q8IYK8 340 aaPredicted RBP13.5□□□□□ -0.25
PSEN1-211ENST00000554995 FXR2P51116 673 aaKnown RBP eCLIP13.46□□□□□ -0.25
PSEN1-211ENST00000554995 EVX2Q03828 476 aa13.44□□□□□ -0.26
PSEN1-211ENST00000554995 PITPNM1O00562 1244 aa13.38□□□□□ -0.27
PSEN1-211ENST00000554995 ZBTB12Q9Y330 459 aaPredicted RBP13.27□□□□□ -0.29
PSEN1-211ENST00000554995 OSCARQ8IYS5 282 aa13.24□□□□□ -0.29
PSEN1-211ENST00000554995 LHX8Q68G74 356 aa13.23□□□□□ -0.29
PSEN1-211ENST00000554995 SPDYE4A6NLX3 237 aa13.1□□□□□ -0.31
PSEN1-211ENST00000554995 MKRN4PQ13434 485 aaPredicted RBP13.08□□□□□ -0.32
PSEN1-211ENST00000554995 PLSCR2Q9NRY7 297 aa13.07□□□□□ -0.32
PSEN1-211ENST00000554995 FBXO3Q9UK99 471 aa13.07□□□□□ -0.32
PSEN1-211ENST00000554995 C19orf67A6NJJ6 358 aa13.06□□□□□ -0.32
PSEN1-211ENST00000554995 GABBR2O75899 941 aa13.06□□□□□ -0.32
PSEN1-211ENST00000554995 PRKAR2AP13861 404 aaKnown RBP12.99□□□□□ -0.33
PSEN1-211ENST00000554995 PROM2Q8N271 834 aa12.99□□□□□ -0.33
PSEN1-211ENST00000554995 FBLN2P98095 1184 aa12.98□□□□□ -0.33
PSEN1-211ENST00000554995 VASPP50552 380 aaPredicted RBP12.9□□□□□ -0.34
PSEN1-211ENST00000554995 POTEIP0CG38 1075 aa12.82□□□□□ -0.36
PSEN1-211ENST00000554995 SPDYE2BA6NHP3 402 aa12.81□□□□□ -0.36
PSEN1-211ENST00000554995 SPDYE6P0CI01 402 aa12.81□□□□□ -0.36
PSEN1-211ENST00000554995 SPDYE2Q495Y8 402 aa12.81□□□□□ -0.36
PSEN1-211ENST00000554995 IFNLR1Q8IU57 520 aaPredicted RBP12.79□□□□□ -0.36
PSEN1-211ENST00000554995 SPDYE1Q8NFV5 336 aaPredicted RBP12.78□□□□□ -0.36
PSEN1-211ENST00000554995 CLEC11AQ9Y240 323 aa12.76□□□□□ -0.37
PSEN1-211ENST00000554995 PLCB2Q00722 1185 aa12.69□□□□□ -0.38
PSEN1-211ENST00000554995 CHADLQ6NUI6 762 aa12.66□□□□□ -0.38
PSEN1-211ENST00000554995 PKD2Q13563 968 aa12.63□□□□□ -0.39
PSEN1-211ENST00000554995 ZNF692Q9BU19 519 aaPredicted RBP12.63□□□□□ -0.39
PSEN1-211ENST00000554995 DCAF8L2P0C7V8 631 aa12.62□□□□□ -0.39
PSEN1-211ENST00000554995 SSUH2Q9Y2M2 353 aa12.6□□□□□ -0.39
PSEN1-211ENST00000554995 CLCN6P51797 869 aa12.54□□□□□ -0.4
PSEN1-211ENST00000554995 CD44P16070 742 aaKnown RBP12.53□□□□□ -0.4
PSEN1-211ENST00000554995 POTEMA6NI47 508 aa12.51□□□□□ -0.41
PSEN1-211ENST00000554995 HAP1P54257 671 aaPredicted RBP12.51□□□□□ -0.41
PSEN1-211ENST00000554995 KLHL34Q8N239 644 aa12.51□□□□□ -0.41
PSEN1-211ENST00000554995 SPOCK2Q92563 424 aa12.5□□□□□ -0.41
PSEN1-211ENST00000554995 OTUD5Q96G74 571 aa12.5□□□□□ -0.41
PSEN1-211ENST00000554995 STAG3Q9UJ98 1225 aa12.47□□□□□ -0.41
PSEN1-211ENST00000554995 DCBLD2Q96PD2 775 aa12.46□□□□□ -0.41
PSEN1-211ENST00000554995 PRR29P0C7W0 189 aa12.44□□□□□ -0.42
PSEN1-211ENST00000554995 POTEGQ6S5H5 508 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms