RNA–Protein interactions for RNA: ENST00000554821.1

CFAP54-207, Transcript of cilia and flagella associated protein 54, humanhuman

TSL 3

Gene CFAP54, Length 474 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54-207ENST00000554821 AEBP2Q6ZN18 517 aaPredicted RBP24.73■■□□□ 1.55
CFAP54-207ENST00000554821 CHIC1Q5VXU3 224 aa23.19■■□□□ 1.3
CFAP54-207ENST00000554821 SENP3Q9H4L4 574 aaPredicted RBP21.35■■□□□ 1.01
CFAP54-207ENST00000554821 PHF23Q9BUL5 403 aaPredicted RBP20.86■□□□□ 0.93
CFAP54-207ENST00000554821 POTEDQ86YR6 584 aa20.52■□□□□ 0.88
CFAP54-207ENST00000554821 FOXD1Q16676 465 aa19.95■□□□□ 0.78
CFAP54-207ENST00000554821 MSH5O43196 834 aa19.14■□□□□ 0.65
CFAP54-207ENST00000554821 PIAS4Q8N2W9 510 aaPredicted RBP18.41■□□□□ 0.54
CFAP54-207ENST00000554821 PPP6R1Q9UPN7 881 aa17.84■□□□□ 0.45
CFAP54-207ENST00000554821 ADRA2BP18089 450 aa17.72■□□□□ 0.43
CFAP54-207ENST00000554821 PLPPR3Q6T4P5 718 aa17.61■□□□□ 0.41
CFAP54-207ENST00000554821 CACNB1Q02641 598 aaPredicted RBP16.98■□□□□ 0.31
CFAP54-207ENST00000554821 DMRT2Q9Y5R5 561 aa16.77■□□□□ 0.28
CFAP54-207ENST00000554821 MAPK8IP2Q13387 824 aaPredicted RBP16.55■□□□□ 0.24
CFAP54-207ENST00000554821 SCAF1Q9H7N4 1312 aaKnown RBP16.33■□□□□ 0.2
CFAP54-207ENST00000554821 RNF39Q9H2S5 420 aa16.21■□□□□ 0.19
CFAP54-207ENST00000554821 DCAF8L1A6NGE4 600 aa16.02■□□□□ 0.16
CFAP54-207ENST00000554821 C1QBPQ07021 282 aaKnown RBP15.95■□□□□ 0.14
CFAP54-207ENST00000554821 POTEHQ6S545 545 aa15.84■□□□□ 0.13
CFAP54-207ENST00000554821 HOXD11P31277 338 aaPredicted RBP15.76■□□□□ 0.11
CFAP54-207ENST00000554821 DNAJC5BQ9UF47 199 aa15.51■□□□□ 0.07
CFAP54-207ENST00000554821 RNF216Q9NWF9 866 aaPredicted RBP15.37■□□□□ 0.05
CFAP54-207ENST00000554821 PPP4R3CPQ6ZMV5 832 aa15.26■□□□□ 0.03
CFAP54-207ENST00000554821 CNKSR2Q8WXI2 1034 aa15.25■□□□□ 0.03
CFAP54-207ENST00000554821 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.96□□□□□ -0.01
CFAP54-207ENST00000554821 DSG3P32926 999 aa14.82□□□□□ -0.04
CFAP54-207ENST00000554821 CAPN15O75808 1086 aa14.63□□□□□ -0.07
CFAP54-207ENST00000554821 NCBP3Q53F19 620 aaKnown RBP14.63□□□□□ -0.07
CFAP54-207ENST00000554821 SPINK5Q9NQ38 1064 aaPredicted RBP14.59□□□□□ -0.07
CFAP54-207ENST00000554821 U3KPZ7 1027 aaPredicted RBP14.55□□□□□ -0.08
CFAP54-207ENST00000554821 SP7Q8TDD2 431 aaPredicted RBP14.32□□□□□ -0.12
CFAP54-207ENST00000554821 CHRDL2Q6WN34 429 aa14.26□□□□□ -0.13
CFAP54-207ENST00000554821 NPM3O75607 178 aaKnown RBP14.24□□□□□ -0.13
CFAP54-207ENST00000554821 RBM42Q9BTD8 480 aaKnown RBP14.24□□□□□ -0.13
CFAP54-207ENST00000554821 KCNA4P22459 653 aa14.22□□□□□ -0.13
CFAP54-207ENST00000554821 ABCB7O75027 752 aa14.17□□□□□ -0.14
CFAP54-207ENST00000554821 ZNF219Q9P2Y4 722 aaPredicted RBP14.17□□□□□ -0.14
CFAP54-207ENST00000554821 TRHP20396 242 aaPredicted RBP14.14□□□□□ -0.15
CFAP54-207ENST00000554821 APLP2Q06481 763 aa14.14□□□□□ -0.15
CFAP54-207ENST00000554821 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.86□□□□□ -0.19
CFAP54-207ENST00000554821 HNRNPUL2Q1KMD3 747 aaKnown RBP13.86□□□□□ -0.19
CFAP54-207ENST00000554821 SLC4A2P04920 1241 aa13.77□□□□□ -0.21
CFAP54-207ENST00000554821 SAMD1Q6SPF0 538 aaPredicted RBP13.71□□□□□ -0.21
CFAP54-207ENST00000554821 HAX1O00165 279 aa13.69□□□□□ -0.22
CFAP54-207ENST00000554821 PIP4P2Q8N4L2 257 aa13.69□□□□□ -0.22
CFAP54-207ENST00000554821 AKT1S1Q96B36 256 aa13.67□□□□□ -0.22
CFAP54-207ENST00000554821 SLC4A1APQ9BWU0 796 aaKnown RBP13.58□□□□□ -0.24
CFAP54-207ENST00000554821 POLA2Q14181 598 aa13.55□□□□□ -0.24
CFAP54-207ENST00000554821 REM2Q8IYK8 340 aaPredicted RBP13.49□□□□□ -0.25
CFAP54-207ENST00000554821 FXR2P51116 673 aaKnown RBP eCLIP13.48□□□□□ -0.25
CFAP54-207ENST00000554821 PLSCR2Q9NRY7 297 aa13.44□□□□□ -0.26
CFAP54-207ENST00000554821 EVX2Q03828 476 aa13.43□□□□□ -0.26
CFAP54-207ENST00000554821 LHX8Q68G74 356 aa13.4□□□□□ -0.26
CFAP54-207ENST00000554821 PITPNM1O00562 1244 aa13.36□□□□□ -0.27
CFAP54-207ENST00000554821 ZBTB12Q9Y330 459 aaPredicted RBP13.31□□□□□ -0.28
CFAP54-207ENST00000554821 FOXD4L1Q9NU39 408 aa13.29□□□□□ -0.28
CFAP54-207ENST00000554821 MYCNP04198 464 aaPredicted RBP13.28□□□□□ -0.28
CFAP54-207ENST00000554821 OSCARQ8IYS5 282 aa13.16□□□□□ -0.3
CFAP54-207ENST00000554821 GABBR2O75899 941 aa13.1□□□□□ -0.31
CFAP54-207ENST00000554821 C19orf67A6NJJ6 358 aa13.09□□□□□ -0.31
CFAP54-207ENST00000554821 ZBTB22O15209 634 aa13.02□□□□□ -0.33
CFAP54-207ENST00000554821 PRKAR2AP13861 404 aaKnown RBP13□□□□□ -0.33
CFAP54-207ENST00000554821 ATXN8OSP0DMR3 200 aa12.94□□□□□ -0.34
CFAP54-207ENST00000554821 ATF5Q9Y2D1 282 aaPredicted RBP12.84□□□□□ -0.35
CFAP54-207ENST00000554821 POTEIP0CG38 1075 aa12.8□□□□□ -0.36
CFAP54-207ENST00000554821 SPDYE1Q8NFV5 336 aaPredicted RBP12.79□□□□□ -0.36
CFAP54-207ENST00000554821 SPDYE2BA6NHP3 402 aa12.78□□□□□ -0.36
CFAP54-207ENST00000554821 SPDYE6P0CI01 402 aa12.78□□□□□ -0.36
CFAP54-207ENST00000554821 SPDYE2Q495Y8 402 aa12.78□□□□□ -0.36
CFAP54-207ENST00000554821 EHMT2Q96KQ7 1210 aa12.78□□□□□ -0.36
CFAP54-207ENST00000554821 CSRNP3Q8WYN3 585 aa12.76□□□□□ -0.37
CFAP54-207ENST00000554821 CLEC11AQ9Y240 323 aa12.74□□□□□ -0.37
CFAP54-207ENST00000554821 CLCN6P51797 869 aa12.69□□□□□ -0.38
CFAP54-207ENST00000554821 POTEMA6NI47 508 aa12.67□□□□□ -0.38
CFAP54-207ENST00000554821 PCDH10Q9P2E7 1040 aa12.6□□□□□ -0.39
CFAP54-207ENST00000554821 POTEGQ6S5H5 508 aa12.59□□□□□ -0.39
CFAP54-207ENST00000554821 CHADLQ6NUI6 762 aa12.58□□□□□ -0.4
CFAP54-207ENST00000554821 DCBLD2Q96PD2 775 aa12.55□□□□□ -0.4
CFAP54-207ENST00000554821 CD44P16070 742 aaKnown RBP12.54□□□□□ -0.4
CFAP54-207ENST00000554821 OTUD5Q96G74 571 aa12.54□□□□□ -0.4
CFAP54-207ENST00000554821 FBLN2P98095 1184 aa12.5□□□□□ -0.41
CFAP54-207ENST00000554821 SSUH2Q9Y2M2 353 aa12.49□□□□□ -0.41
CFAP54-207ENST00000554821 PRR29P0C7W0 189 aa12.42□□□□□ -0.42
CFAP54-207ENST00000554821 ZNF692Q9BU19 519 aaPredicted RBP12.4□□□□□ -0.42
CFAP54-207ENST00000554821 FARP1Q9Y4F1 1045 aaPredicted RBP12.36□□□□□ -0.43
CFAP54-207ENST00000554821 POTEB2H3BUK9 544 aa12.34□□□□□ -0.43
CFAP54-207ENST00000554821 ZNF579Q8NAF0 562 aaKnown RBP12.34□□□□□ -0.43
CFAP54-207ENST00000554821 MKRN4PQ13434 485 aaPredicted RBP12.23□□□□□ -0.45
CFAP54-207ENST00000554821 GALR2O43603 387 aaPredicted RBP12.19□□□□□ -0.46
CFAP54-207ENST00000554821 PABPN1Q86U42 306 aaKnown RBP eCLIP12.18□□□□□ -0.46
CFAP54-207ENST00000554821 ZRANB1Q9UGI0 708 aa12.18□□□□□ -0.46
CFAP54-207ENST00000554821 LCE2DQ5TA82 110 aaPredicted RBP12.17□□□□□ -0.46
CFAP54-207ENST00000554821 MAMSTRQ6ZN01 415 aa12.08□□□□□ -0.48
CFAP54-207ENST00000554821 PELP1Q8IZL8 1130 aaKnown RBP12.03□□□□□ -0.48
CFAP54-207ENST00000554821 FAM163AQ96GL9 167 aaPredicted RBP12.01□□□□□ -0.49
CFAP54-207ENST00000554821 POTEJP0CG39 1038 aa12□□□□□ -0.49
CFAP54-207ENST00000554821 METRNQ9UJH8 293 aa12□□□□□ -0.49
CFAP54-207ENST00000554821 SLC39A7Q92504 469 aa11.97□□□□□ -0.49
CFAP54-207ENST00000554821 C7P10643 843 aa11.96□□□□□ -0.49
CFAP54-207ENST00000554821 ASTLQ6HA08 431 aaPredicted RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms