RNA–Protein interactions for RNA: ENST00000554819.5

SCFD1-214, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 608 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-214ENST00000554819 AEBP2Q6ZN18 517 aaPredicted RBP21.69■■□□□ 1.06
SCFD1-214ENST00000554819 CHIC1Q5VXU3 224 aa21.28■■□□□ 1
SCFD1-214ENST00000554819 PHF23Q9BUL5 403 aaPredicted RBP18.68■□□□□ 0.58
SCFD1-214ENST00000554819 SENP3Q9H4L4 574 aaPredicted RBP18.5■□□□□ 0.55
SCFD1-214ENST00000554819 PLPPR3Q6T4P5 718 aa17.34■□□□□ 0.37
SCFD1-214ENST00000554819 FOXD1Q16676 465 aa17.11■□□□□ 0.33
SCFD1-214ENST00000554819 ADRA2BP18089 450 aa16.46■□□□□ 0.23
SCFD1-214ENST00000554819 PPP6R1Q9UPN7 881 aa16.46■□□□□ 0.23
SCFD1-214ENST00000554819 PIAS4Q8N2W9 510 aaPredicted RBP16.17■□□□□ 0.18
SCFD1-214ENST00000554819 MSH5O43196 834 aa15.84■□□□□ 0.13
SCFD1-214ENST00000554819 POTEDQ86YR6 584 aa15.78■□□□□ 0.12
SCFD1-214ENST00000554819 PPP4R3CPQ6ZMV5 832 aa15.26■□□□□ 0.03
SCFD1-214ENST00000554819 SCAF1Q9H7N4 1312 aaKnown RBP15.18■□□□□ 0.02
SCFD1-214ENST00000554819 NCBP3Q53F19 620 aaKnown RBP14.93□□□□□ -0.02
SCFD1-214ENST00000554819 MAPK8IP2Q13387 824 aaPredicted RBP14.92□□□□□ -0.02
SCFD1-214ENST00000554819 KCNA4P22459 653 aa14.89□□□□□ -0.03
SCFD1-214ENST00000554819 CNKSR2Q8WXI2 1034 aa14.85□□□□□ -0.03
SCFD1-214ENST00000554819 DMRT2Q9Y5R5 561 aa14.75□□□□□ -0.05
SCFD1-214ENST00000554819 NPM3O75607 178 aaKnown RBP14.62□□□□□ -0.07
SCFD1-214ENST00000554819 RNF216Q9NWF9 866 aaPredicted RBP14.55□□□□□ -0.08
SCFD1-214ENST00000554819 HOXD11P31277 338 aaPredicted RBP14.46□□□□□ -0.09
SCFD1-214ENST00000554819 DNAJC5BQ9UF47 199 aa14.24□□□□□ -0.13
SCFD1-214ENST00000554819 SLC4A1APQ9BWU0 796 aaKnown RBP14.23□□□□□ -0.13
SCFD1-214ENST00000554819 DCAF8L1A6NGE4 600 aa14.12□□□□□ -0.15
SCFD1-214ENST00000554819 EHMT2Q96KQ7 1210 aa13.82□□□□□ -0.2
SCFD1-214ENST00000554819 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.8□□□□□ -0.22e-7■□□□□ 10.5
SCFD1-214ENST00000554819 SLC4A2P04920 1241 aa13.78□□□□□ -0.2
SCFD1-214ENST00000554819 FOXD4L1Q9NU39 408 aa13.74□□□□□ -0.21
SCFD1-214ENST00000554819 ZBTB22O15209 634 aa13.66□□□□□ -0.22
SCFD1-214ENST00000554819 CSRNP3Q8WYN3 585 aa13.66□□□□□ -0.22
SCFD1-214ENST00000554819 MYCNP04198 464 aaPredicted RBP13.56□□□□□ -0.24
SCFD1-214ENST00000554819 U3KPZ7 1027 aaPredicted RBP13.54□□□□□ -0.24
SCFD1-214ENST00000554819 RNF39Q9H2S5 420 aa13.53□□□□□ -0.24
SCFD1-214ENST00000554819 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.48□□□□□ -0.25
SCFD1-214ENST00000554819 HNRNPUL2Q1KMD3 747 aaKnown RBP13.48□□□□□ -0.25
SCFD1-214ENST00000554819 C1QBPQ07021 282 aaKnown RBP13.42□□□□□ -0.26
SCFD1-214ENST00000554819 CACNB1Q02641 598 aaPredicted RBP13.41□□□□□ -0.26
SCFD1-214ENST00000554819 SAMD1Q6SPF0 538 aaPredicted RBP13.4□□□□□ -0.26
SCFD1-214ENST00000554819 APLP2Q06481 763 aa13.35□□□□□ -0.27
SCFD1-214ENST00000554819 ATXN8OSP0DMR3 200 aa13.3□□□□□ -0.28
SCFD1-214ENST00000554819 CAPN15O75808 1086 aa13.13□□□□□ -0.31
SCFD1-214ENST00000554819 SPINK5Q9NQ38 1064 aaPredicted RBP13.13□□□□□ -0.31
SCFD1-214ENST00000554819 ATF5Q9Y2D1 282 aaPredicted RBP13.11□□□□□ -0.31
SCFD1-214ENST00000554819 ZNF219Q9P2Y4 722 aaPredicted RBP13.1□□□□□ -0.31
SCFD1-214ENST00000554819 TRHP20396 242 aaPredicted RBP13.07□□□□□ -0.32
SCFD1-214ENST00000554819 DSG3P32926 999 aa12.88□□□□□ -0.35
SCFD1-214ENST00000554819 POLA2Q14181 598 aa12.87□□□□□ -0.35
SCFD1-214ENST00000554819 ABCB7O75027 752 aa12.85□□□□□ -0.35
SCFD1-214ENST00000554819 ZBTB12Q9Y330 459 aaPredicted RBP12.71□□□□□ -0.37
SCFD1-214ENST00000554819 FBLN2P98095 1184 aa12.66□□□□□ -0.38
SCFD1-214ENST00000554819 MKRN4PQ13434 485 aaPredicted RBP12.55□□□□□ -0.4
SCFD1-214ENST00000554819 OSCARQ8IYS5 282 aa12.39□□□□□ -0.43
SCFD1-214ENST00000554819 FKBP8Q14318 412 aa12.36□□□□□ -0.43
SCFD1-214ENST00000554819 SPDYE2BA6NHP3 402 aa12.34□□□□□ -0.43
SCFD1-214ENST00000554819 SPDYE4A6NLX3 237 aa12.34□□□□□ -0.43
SCFD1-214ENST00000554819 SPDYE6P0CI01 402 aa12.34□□□□□ -0.43
SCFD1-214ENST00000554819 SPDYE2Q495Y8 402 aa12.34□□□□□ -0.43
SCFD1-214ENST00000554819 RBM42Q9BTD8 480 aaKnown RBP12.34□□□□□ -0.43
SCFD1-214ENST00000554819 ZNF692Q9BU19 519 aaPredicted RBP12.3□□□□□ -0.44
SCFD1-214ENST00000554819 POTEHQ6S545 545 aa12.26□□□□□ -0.45
SCFD1-214ENST00000554819 SSUH2Q9Y2M2 353 aa12.21□□□□□ -0.45
SCFD1-214ENST00000554819 AKT1S1Q96B36 256 aa12.17□□□□□ -0.46
SCFD1-214ENST00000554819 PABPN1Q86U42 306 aaKnown RBP eCLIP12.11□□□□□ -0.47
SCFD1-214ENST00000554819 PROM2Q8N271 834 aa12.11□□□□□ -0.47
SCFD1-214ENST00000554819 REM2Q8IYK8 340 aaPredicted RBP12.03□□□□□ -0.48
SCFD1-214ENST00000554819 FBXO3Q9UK99 471 aa12□□□□□ -0.49
SCFD1-214ENST00000554819 STAG3Q9UJ98 1225 aa11.99□□□□□ -0.49
SCFD1-214ENST00000554819 SPDYE1Q8NFV5 336 aaPredicted RBP11.98□□□□□ -0.49
SCFD1-214ENST00000554819 CLEC11AQ9Y240 323 aa11.9□□□□□ -0.5
SCFD1-214ENST00000554819 PITPNM1O00562 1244 aa11.87□□□□□ -0.51
SCFD1-214ENST00000554819 PRR29P0C7W0 189 aa11.83□□□□□ -0.52
SCFD1-214ENST00000554819 VASPP50552 380 aaPredicted RBP11.76□□□□□ -0.53
SCFD1-214ENST00000554819 CHRDL2Q6WN34 429 aa11.76□□□□□ -0.53
SCFD1-214ENST00000554819 PLEKHG5O94827 1062 aa11.73□□□□□ -0.53
SCFD1-214ENST00000554819 MIER1Q8N108 512 aa11.73□□□□□ -0.53
SCFD1-214ENST00000554819 PLCD3Q8N3E9 789 aa11.71□□□□□ -0.53
SCFD1-214ENST00000554819 FXR2P51116 673 aaKnown RBP eCLIP11.66□□□□□ -0.54
SCFD1-214ENST00000554819 CREBZFQ9NS37 354 aa11.63□□□□□ -0.55
SCFD1-214ENST00000554819 ZBTB47Q9UFB7 747 aaPredicted RBP11.63□□□□□ -0.55
SCFD1-214ENST00000554819 PIP4P2Q8N4L2 257 aa11.61□□□□□ -0.55
SCFD1-214ENST00000554819 PRKAR2AP13861 404 aaKnown RBP11.6□□□□□ -0.55
SCFD1-214ENST00000554819 IFNLR1Q8IU57 520 aaPredicted RBP11.59□□□□□ -0.55
SCFD1-214ENST00000554819 KLHL34Q8N239 644 aa11.59□□□□□ -0.55
SCFD1-214ENST00000554819 CHADLQ6NUI6 762 aa11.57□□□□□ -0.56
SCFD1-214ENST00000554819 NPM1P06748 294 aaKnown RBP eCLIP11.52□□□□□ -0.57
SCFD1-214ENST00000554819 FARP1Q9Y4F1 1045 aaPredicted RBP11.5□□□□□ -0.57
SCFD1-214ENST00000554819 MNX1P50219 401 aaPredicted RBP11.49□□□□□ -0.57
SCFD1-214ENST00000554819 SPOCK2Q92563 424 aa11.49□□□□□ -0.57
SCFD1-214ENST00000554819 NUBP1P53384 320 aa11.37□□□□□ -0.59
SCFD1-214ENST00000554819 AMER1Q5JTC6 1135 aaPredicted RBP11.37□□□□□ -0.59
SCFD1-214ENST00000554819 GSE1Q14687 1217 aa11.33□□□□□ -0.6
SCFD1-214ENST00000554819 FAM212AQ96EL1 285 aa11.33□□□□□ -0.6
SCFD1-214ENST00000554819 PAK3O75914 559 aaPredicted RBP11.32□□□□□ -0.6
SCFD1-214ENST00000554819 DCAF8Q5TAQ9 597 aa11.32□□□□□ -0.6
SCFD1-214ENST00000554819 RASEFQ8IZ41 740 aa11.31□□□□□ -0.6
SCFD1-214ENST00000554819 CIZ1Q9ULV3 898 aaPredicted RBP11.3□□□□□ -0.6
SCFD1-214ENST00000554819 C19orf67A6NJJ6 358 aa11.26□□□□□ -0.61
SCFD1-214ENST00000554819 HAX1O00165 279 aa11.26□□□□□ -0.61
SCFD1-214ENST00000554819 CD44P16070 742 aaKnown RBP11.26□□□□□ -0.61
SCFD1-214ENST00000554819 SP7Q8TDD2 431 aaPredicted RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms