RNA–Protein interactions for RNA: ENST00000554707.1

PCNX1-208, Transcript of pecanex 1, humanhuman

TSL 3

Gene PCNX1, Length 475 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX1-208ENST00000554707 AEBP2Q6ZN18 517 aaPredicted RBP23.51■■□□□ 1.35
PCNX1-208ENST00000554707 CHIC1Q5VXU3 224 aa23.11■■□□□ 1.29
PCNX1-208ENST00000554707 PHF23Q9BUL5 403 aaPredicted RBP20.28■□□□□ 0.84
PCNX1-208ENST00000554707 SENP3Q9H4L4 574 aaPredicted RBP20.04■□□□□ 0.8
PCNX1-208ENST00000554707 PLPPR3Q6T4P5 718 aa18.82■□□□□ 0.6
PCNX1-208ENST00000554707 FOXD1Q16676 465 aa18.57■□□□□ 0.56
PCNX1-208ENST00000554707 PPP6R1Q9UPN7 881 aa17.85■□□□□ 0.45
PCNX1-208ENST00000554707 ADRA2BP18089 450 aa17.83■□□□□ 0.44
PCNX1-208ENST00000554707 PIAS4Q8N2W9 510 aaPredicted RBP17.47■□□□□ 0.39
PCNX1-208ENST00000554707 MSH5O43196 834 aa17.32■□□□□ 0.36
PCNX1-208ENST00000554707 POTEDQ86YR6 584 aa17.06■□□□□ 0.32
PCNX1-208ENST00000554707 PPP4R3CPQ6ZMV5 832 aa16.55■□□□□ 0.24
PCNX1-208ENST00000554707 SCAF1Q9H7N4 1312 aaKnown RBP16.45■□□□□ 0.22
PCNX1-208ENST00000554707 NCBP3Q53F19 620 aaKnown RBP16.21■□□□□ 0.19
PCNX1-208ENST00000554707 KCNA4P22459 653 aa16.19■□□□□ 0.18
PCNX1-208ENST00000554707 MAPK8IP2Q13387 824 aaPredicted RBP16.14■□□□□ 0.17
PCNX1-208ENST00000554707 CNKSR2Q8WXI2 1034 aa16.12■□□□□ 0.17
PCNX1-208ENST00000554707 DMRT2Q9Y5R5 561 aa15.99■□□□□ 0.15
PCNX1-208ENST00000554707 NPM3O75607 178 aaKnown RBP15.89■□□□□ 0.13
PCNX1-208ENST00000554707 RNF216Q9NWF9 866 aaPredicted RBP15.79■□□□□ 0.12
PCNX1-208ENST00000554707 HOXD11P31277 338 aaPredicted RBP15.71■□□□□ 0.11
PCNX1-208ENST00000554707 DNAJC5BQ9UF47 199 aa15.58■□□□□ 0.08
PCNX1-208ENST00000554707 SLC4A1APQ9BWU0 796 aaKnown RBP15.46■□□□□ 0.07
PCNX1-208ENST00000554707 DCAF8L1A6NGE4 600 aa15.2■□□□□ 0.02
PCNX1-208ENST00000554707 EHMT2Q96KQ7 1210 aa15□□□□□ -0.01
PCNX1-208ENST00000554707 SLC4A2P04920 1241 aa14.98□□□□□ -0.01
PCNX1-208ENST00000554707 FOXD4L1Q9NU39 408 aa14.94□□□□□ -0.02
PCNX1-208ENST00000554707 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.92□□□□□ -0.02
PCNX1-208ENST00000554707 CACNB1Q02641 598 aaPredicted RBP14.9□□□□□ -0.02
PCNX1-208ENST00000554707 CSRNP3Q8WYN3 585 aa14.89□□□□□ -0.03
PCNX1-208ENST00000554707 ZBTB22O15209 634 aa14.87□□□□□ -0.03
PCNX1-208ENST00000554707 RNF39Q9H2S5 420 aa14.82□□□□□ -0.04
PCNX1-208ENST00000554707 MYCNP04198 464 aaPredicted RBP14.72□□□□□ -0.05
PCNX1-208ENST00000554707 U3KPZ7 1027 aaPredicted RBP14.67□□□□□ -0.06
PCNX1-208ENST00000554707 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.62□□□□□ -0.07
PCNX1-208ENST00000554707 HNRNPUL2Q1KMD3 747 aaKnown RBP14.62□□□□□ -0.07
PCNX1-208ENST00000554707 C1QBPQ07021 282 aaKnown RBP14.59□□□□□ -0.07
PCNX1-208ENST00000554707 SAMD1Q6SPF0 538 aaPredicted RBP14.54□□□□□ -0.08
PCNX1-208ENST00000554707 ATXN8OSP0DMR3 200 aa14.5□□□□□ -0.09
PCNX1-208ENST00000554707 APLP2Q06481 763 aa14.47□□□□□ -0.09
PCNX1-208ENST00000554707 ATF5Q9Y2D1 282 aaPredicted RBP14.22□□□□□ -0.13
PCNX1-208ENST00000554707 SPINK5Q9NQ38 1064 aaPredicted RBP14.2□□□□□ -0.14
PCNX1-208ENST00000554707 ZNF219Q9P2Y4 722 aaPredicted RBP14.19□□□□□ -0.14
PCNX1-208ENST00000554707 CAPN15O75808 1086 aa14.17□□□□□ -0.14
PCNX1-208ENST00000554707 TRHP20396 242 aaPredicted RBP14.1□□□□□ -0.15
PCNX1-208ENST00000554707 DSG3P32926 999 aa13.95□□□□□ -0.18
PCNX1-208ENST00000554707 POLA2Q14181 598 aa13.92□□□□□ -0.18
PCNX1-208ENST00000554707 ABCB7O75027 752 aa13.85□□□□□ -0.19
PCNX1-208ENST00000554707 ZBTB12Q9Y330 459 aaPredicted RBP13.79□□□□□ -0.2
PCNX1-208ENST00000554707 FBLN2P98095 1184 aa13.73□□□□□ -0.21
PCNX1-208ENST00000554707 MKRN4PQ13434 485 aaPredicted RBP13.64□□□□□ -0.23
PCNX1-208ENST00000554707 FKBP8Q14318 412 aa13.43□□□□□ -0.26
PCNX1-208ENST00000554707 SPDYE2BA6NHP3 402 aa13.41□□□□□ -0.26
PCNX1-208ENST00000554707 SPDYE6P0CI01 402 aa13.41□□□□□ -0.26
PCNX1-208ENST00000554707 SPDYE2Q495Y8 402 aa13.41□□□□□ -0.26
PCNX1-208ENST00000554707 SPDYE4A6NLX3 237 aa13.4□□□□□ -0.26
PCNX1-208ENST00000554707 OSCARQ8IYS5 282 aa13.4□□□□□ -0.26
PCNX1-208ENST00000554707 RBM42Q9BTD8 480 aaKnown RBP13.36□□□□□ -0.27
PCNX1-208ENST00000554707 POTEHQ6S545 545 aa13.35□□□□□ -0.27
PCNX1-208ENST00000554707 ZNF692Q9BU19 519 aaPredicted RBP13.32□□□□□ -0.28
PCNX1-208ENST00000554707 SSUH2Q9Y2M2 353 aa13.28□□□□□ -0.28
PCNX1-208ENST00000554707 PROM2Q8N271 834 aa13.24□□□□□ -0.29
PCNX1-208ENST00000554707 AKT1S1Q96B36 256 aa13.2□□□□□ -0.3
PCNX1-208ENST00000554707 PABPN1Q86U42 306 aaKnown RBP eCLIP13.12□□□□□ -0.31
PCNX1-208ENST00000554707 FBXO3Q9UK99 471 aa13.05□□□□□ -0.32
PCNX1-208ENST00000554707 STAG3Q9UJ98 1225 aa13.03□□□□□ -0.32
PCNX1-208ENST00000554707 REM2Q8IYK8 340 aaPredicted RBP13.02□□□□□ -0.33
PCNX1-208ENST00000554707 SPDYE1Q8NFV5 336 aaPredicted RBP12.98□□□□□ -0.33
PCNX1-208ENST00000554707 CHRDL2Q6WN34 429 aa12.89□□□□□ -0.35
PCNX1-208ENST00000554707 PITPNM1O00562 1244 aa12.84□□□□□ -0.35
PCNX1-208ENST00000554707 CLEC11AQ9Y240 323 aa12.84□□□□□ -0.35
PCNX1-208ENST00000554707 PRR29P0C7W0 189 aa12.79□□□□□ -0.36
PCNX1-208ENST00000554707 VASPP50552 380 aaPredicted RBP12.79□□□□□ -0.36
PCNX1-208ENST00000554707 PLEKHG5O94827 1062 aa12.7□□□□□ -0.38
PCNX1-208ENST00000554707 MIER1Q8N108 512 aa12.7□□□□□ -0.38
PCNX1-208ENST00000554707 PLCD3Q8N3E9 789 aa12.68□□□□□ -0.38
PCNX1-208ENST00000554707 FXR2P51116 673 aaKnown RBP eCLIP12.65□□□□□ -0.38
PCNX1-208ENST00000554707 ZBTB47Q9UFB7 747 aaPredicted RBP12.63□□□□□ -0.39
PCNX1-208ENST00000554707 PIP4P2Q8N4L2 257 aa12.62□□□□□ -0.39
PCNX1-208ENST00000554707 CREBZFQ9NS37 354 aa12.62□□□□□ -0.39
PCNX1-208ENST00000554707 IFNLR1Q8IU57 520 aaPredicted RBP12.61□□□□□ -0.39
PCNX1-208ENST00000554707 KLHL34Q8N239 644 aa12.55□□□□□ -0.4
PCNX1-208ENST00000554707 PRKAR2AP13861 404 aaKnown RBP12.52□□□□□ -0.41
PCNX1-208ENST00000554707 MNX1P50219 401 aaPredicted RBP12.5□□□□□ -0.41
PCNX1-208ENST00000554707 CHADLQ6NUI6 762 aa12.49□□□□□ -0.41
PCNX1-208ENST00000554707 SPOCK2Q92563 424 aa12.49□□□□□ -0.41
PCNX1-208ENST00000554707 NPM1P06748 294 aaKnown RBP eCLIP12.48□□□□□ -0.41
PCNX1-208ENST00000554707 FARP1Q9Y4F1 1045 aaPredicted RBP12.46□□□□□ -0.41
PCNX1-208ENST00000554707 SP7Q8TDD2 431 aaPredicted RBP12.45□□□□□ -0.42
PCNX1-208ENST00000554707 AMER1Q5JTC6 1135 aaPredicted RBP12.43□□□□□ -0.42
PCNX1-208ENST00000554707 NUBP1P53384 320 aa12.38□□□□□ -0.43
PCNX1-208ENST00000554707 HAX1O00165 279 aa12.37□□□□□ -0.43
PCNX1-208ENST00000554707 GSE1Q14687 1217 aa12.31□□□□□ -0.44
PCNX1-208ENST00000554707 FAM212AQ96EL1 285 aa12.29□□□□□ -0.44
PCNX1-208ENST00000554707 RTN4Q9NQC3 1192 aaKnown RBP12.29□□□□□ -0.44
PCNX1-208ENST00000554707 RASEFQ8IZ41 740 aa12.26□□□□□ -0.45
PCNX1-208ENST00000554707 DCAF8Q5TAQ9 597 aa12.25□□□□□ -0.45
PCNX1-208ENST00000554707 TRIM41Q8WV44 630 aa12.25□□□□□ -0.45
PCNX1-208ENST00000554707 CIZ1Q9ULV3 898 aaPredicted RBP12.23□□□□□ -0.45
PCNX1-208ENST00000554707 PAK3O75914 559 aaPredicted RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms