RNA–Protein interactions for RNA: ENST00000552610.1

RAB3IP-217, Transcript of RAB3A interacting protein, humanhuman

TSL 2

Gene RAB3IP, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3IP-217ENST00000552610 AEBP2Q6ZN18 517 aaPredicted RBP27.79■■■□□ 2.04
RAB3IP-217ENST00000552610 CHIC1Q5VXU3 224 aa26.98■■□□□ 1.91
RAB3IP-217ENST00000552610 PHF23Q9BUL5 403 aaPredicted RBP23.76■■□□□ 1.39
RAB3IP-217ENST00000552610 SENP3Q9H4L4 574 aaPredicted RBP23.5■■□□□ 1.35
RAB3IP-217ENST00000552610 FOXD1Q16676 465 aa21.89■■□□□ 1.09
RAB3IP-217ENST00000552610 PLPPR3Q6T4P5 718 aa21.82■■□□□ 1.08
RAB3IP-217ENST00000552610 PPP6R1Q9UPN7 881 aa21■□□□□ 0.95
RAB3IP-217ENST00000552610 ADRA2BP18089 450 aa20.95■□□□□ 0.94
RAB3IP-217ENST00000552610 PIAS4Q8N2W9 510 aaPredicted RBP20.59■□□□□ 0.89
RAB3IP-217ENST00000552610 MSH5O43196 834 aa20.16■□□□□ 0.82
RAB3IP-217ENST00000552610 PPP4R3CPQ6ZMV5 832 aa19.24■□□□□ 0.67
RAB3IP-217ENST00000552610 SCAF1Q9H7N4 1312 aaKnown RBP19.06■□□□□ 0.64
RAB3IP-217ENST00000552610 MAPK8IP2Q13387 824 aaPredicted RBP19.06■□□□□ 0.64
RAB3IP-217ENST00000552610 DMRT2Q9Y5R5 561 aa18.77■□□□□ 0.6
RAB3IP-217ENST00000552610 KCNA4P22459 653 aa18.7■□□□□ 0.58
RAB3IP-217ENST00000552610 CNKSR2Q8WXI2 1034 aa18.7■□□□□ 0.58
RAB3IP-217ENST00000552610 NCBP3Q53F19 620 aaKnown RBP18.63■□□□□ 0.57
RAB3IP-217ENST00000552610 POTEDQ86YR6 584 aa18.62■□□□□ 0.57
RAB3IP-217ENST00000552610 NPM3O75607 178 aaKnown RBP18.46■□□□□ 0.55
RAB3IP-217ENST00000552610 RNF216Q9NWF9 866 aaPredicted RBP18.37■□□□□ 0.53
RAB3IP-217ENST00000552610 HOXD11P31277 338 aaPredicted RBP18.35■□□□□ 0.53
RAB3IP-217ENST00000552610 DCAF8L1A6NGE4 600 aa17.94■□□□□ 0.46
RAB3IP-217ENST00000552610 DNAJC5BQ9UF47 199 aa17.9■□□□□ 0.46
RAB3IP-217ENST00000552610 SLC4A1APQ9BWU0 796 aaKnown RBP17.75■□□□□ 0.43
RAB3IP-217ENST00000552610 SLC4A2P04920 1241 aa17.47■□□□□ 0.39
RAB3IP-217ENST00000552610 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.44■□□□□ 0.38
RAB3IP-217ENST00000552610 RNF39Q9H2S5 420 aa17.31■□□□□ 0.36
RAB3IP-217ENST00000552610 ZBTB22O15209 634 aa17.25■□□□□ 0.35
RAB3IP-217ENST00000552610 U3KPZ7 1027 aaPredicted RBP17.22■□□□□ 0.35
RAB3IP-217ENST00000552610 FOXD4L1Q9NU39 408 aa17.21■□□□□ 0.35
RAB3IP-217ENST00000552610 EHMT2Q96KQ7 1210 aa17.15■□□□□ 0.34
RAB3IP-217ENST00000552610 C1QBPQ07021 282 aaKnown RBP17.04■□□□□ 0.32
RAB3IP-217ENST00000552610 MYCNP04198 464 aaPredicted RBP17.02■□□□□ 0.32
RAB3IP-217ENST00000552610 CSRNP3Q8WYN3 585 aa17.01■□□□□ 0.31
RAB3IP-217ENST00000552610 CACNB1Q02641 598 aaPredicted RBP16.9■□□□□ 0.3
RAB3IP-217ENST00000552610 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.84■□□□□ 0.29
RAB3IP-217ENST00000552610 HNRNPUL2Q1KMD3 747 aaKnown RBP16.84■□□□□ 0.29
RAB3IP-217ENST00000552610 SAMD1Q6SPF0 538 aaPredicted RBP16.81■□□□□ 0.28
RAB3IP-217ENST00000552610 SPINK5Q9NQ38 1064 aaPredicted RBP16.77■□□□□ 0.28
RAB3IP-217ENST00000552610 APLP2Q06481 763 aa16.68■□□□□ 0.26
RAB3IP-217ENST00000552610 CAPN15O75808 1086 aa16.66■□□□□ 0.26
RAB3IP-217ENST00000552610 ATF5Q9Y2D1 282 aaPredicted RBP16.65■□□□□ 0.26
RAB3IP-217ENST00000552610 ATXN8OSP0DMR3 200 aa16.58■□□□□ 0.24
RAB3IP-217ENST00000552610 TRHP20396 242 aaPredicted RBP16.56■□□□□ 0.24
RAB3IP-217ENST00000552610 ZNF219Q9P2Y4 722 aaPredicted RBP16.53■□□□□ 0.24
RAB3IP-217ENST00000552610 DSG3P32926 999 aa16.44■□□□□ 0.22
RAB3IP-217ENST00000552610 ABCB7O75027 752 aa16.38■□□□□ 0.21
RAB3IP-217ENST00000552610 POLA2Q14181 598 aa16.27■□□□□ 0.2
RAB3IP-217ENST00000552610 ZBTB12Q9Y330 459 aaPredicted RBP15.93■□□□□ 0.14
RAB3IP-217ENST00000552610 MKRN4PQ13434 485 aaPredicted RBP15.91■□□□□ 0.14
RAB3IP-217ENST00000552610 FBLN2P98095 1184 aa15.84■□□□□ 0.13
RAB3IP-217ENST00000552610 OSCARQ8IYS5 282 aa15.76■□□□□ 0.11
RAB3IP-217ENST00000552610 RBM42Q9BTD8 480 aaKnown RBP15.6■□□□□ 0.09
RAB3IP-217ENST00000552610 SPDYE2BA6NHP3 402 aa15.53■□□□□ 0.08
RAB3IP-217ENST00000552610 SPDYE6P0CI01 402 aa15.53■□□□□ 0.08
RAB3IP-217ENST00000552610 SPDYE2Q495Y8 402 aa15.53■□□□□ 0.08
RAB3IP-217ENST00000552610 ZNF692Q9BU19 519 aaPredicted RBP15.45■□□□□ 0.06
RAB3IP-217ENST00000552610 SSUH2Q9Y2M2 353 aa15.44■□□□□ 0.06
RAB3IP-217ENST00000552610 SPDYE4A6NLX3 237 aa15.43■□□□□ 0.06
RAB3IP-217ENST00000552610 AKT1S1Q96B36 256 aa15.4■□□□□ 0.06
RAB3IP-217ENST00000552610 FKBP8Q14318 412 aa15.37■□□□□ 0.05
RAB3IP-217ENST00000552610 REM2Q8IYK8 340 aaPredicted RBP15.28■□□□□ 0.04
RAB3IP-217ENST00000552610 PABPN1Q86U42 306 aaKnown RBP eCLIP15.27■□□□□ 0.04
RAB3IP-217ENST00000552610 PROM2Q8N271 834 aa15.21■□□□□ 0.03
RAB3IP-217ENST00000552610 PITPNM1O00562 1244 aa15.14■□□□□ 0.01
RAB3IP-217ENST00000552610 SPDYE1Q8NFV5 336 aaPredicted RBP15.09■□□□□ 0.01
RAB3IP-217ENST00000552610 CHRDL2Q6WN34 429 aa15.04■□□□□ -0
RAB3IP-217ENST00000552610 CLEC11AQ9Y240 323 aa15.04■□□□□ -0
RAB3IP-217ENST00000552610 STAG3Q9UJ98 1225 aa14.92□□□□□ -0.02
RAB3IP-217ENST00000552610 PRR29P0C7W0 189 aa14.87□□□□□ -0.03
RAB3IP-217ENST00000552610 FXR2P51116 673 aaKnown RBP eCLIP14.86□□□□□ -0.03
RAB3IP-217ENST00000552610 PIP4P2Q8N4L2 257 aa14.84□□□□□ -0.03
RAB3IP-217ENST00000552610 FBXO3Q9UK99 471 aa14.77□□□□□ -0.05
RAB3IP-217ENST00000552610 CHADLQ6NUI6 762 aa14.74□□□□□ -0.05
RAB3IP-217ENST00000552610 PRKAR2AP13861 404 aaKnown RBP14.73□□□□□ -0.05
RAB3IP-217ENST00000552610 CREBZFQ9NS37 354 aa14.72□□□□□ -0.05
RAB3IP-217ENST00000552610 POTEHQ6S545 545 aa14.7□□□□□ -0.06
RAB3IP-217ENST00000552610 VASPP50552 380 aaPredicted RBP14.64□□□□□ -0.07
RAB3IP-217ENST00000552610 MIER1Q8N108 512 aa14.61□□□□□ -0.07
RAB3IP-217ENST00000552610 MNX1P50219 401 aaPredicted RBP14.58□□□□□ -0.08
RAB3IP-217ENST00000552610 PLCD3Q8N3E9 789 aa14.58□□□□□ -0.08
RAB3IP-217ENST00000552610 FARP1Q9Y4F1 1045 aaPredicted RBP14.55□□□□□ -0.08
RAB3IP-217ENST00000552610 PLEKHG5O94827 1062 aa14.49□□□□□ -0.09
RAB3IP-217ENST00000552610 IFNLR1Q8IU57 520 aaPredicted RBP14.46□□□□□ -0.09
RAB3IP-217ENST00000552610 NPM1P06748 294 aaKnown RBP eCLIP14.39□□□□□ -0.11
RAB3IP-217ENST00000552610 ZBTB47Q9UFB7 747 aaPredicted RBP14.39□□□□□ -0.11
RAB3IP-217ENST00000552610 KLHL34Q8N239 644 aa14.37□□□□□ -0.11
RAB3IP-217ENST00000552610 C19orf67A6NJJ6 358 aa14.36□□□□□ -0.11
RAB3IP-217ENST00000552610 HAX1O00165 279 aa14.35□□□□□ -0.11
RAB3IP-217ENST00000552610 NUBP1P53384 320 aa14.32□□□□□ -0.12
RAB3IP-217ENST00000552610 EVX2Q03828 476 aa14.31□□□□□ -0.12
RAB3IP-217ENST00000552610 CD44P16070 742 aaKnown RBP14.3□□□□□ -0.12
RAB3IP-217ENST00000552610 RASEFQ8IZ41 740 aa14.29□□□□□ -0.12
RAB3IP-217ENST00000552610 SPOCK2Q92563 424 aa14.25□□□□□ -0.13
RAB3IP-217ENST00000552610 TSPYL2Q9H2G4 693 aaPredicted RBP14.2□□□□□ -0.14
RAB3IP-217ENST00000552610 ZRANB1Q9UGI0 708 aa14.2□□□□□ -0.14
RAB3IP-217ENST00000552610 PAK3O75914 559 aaPredicted RBP14.17□□□□□ -0.14
RAB3IP-217ENST00000552610 FAM212AQ96EL1 285 aa14.15□□□□□ -0.14
RAB3IP-217ENST00000552610 CCDC61Q9Y6R9 512 aa14.13□□□□□ -0.15
RAB3IP-217ENST00000552610 ZNF579Q8NAF0 562 aaKnown RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 679 ms