RNA–Protein interactions for RNA: ENST00000551604.2

CUX2-203, Transcript of cut like homeobox 2, humanhuman

TSL 5

Gene CUX2, Length 562 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-203ENST00000551604 AEBP2Q6ZN18 517 aaPredicted RBP23.61■■□□□ 1.37
CUX2-203ENST00000551604 CHIC1Q5VXU3 224 aa22.22■■□□□ 1.15
CUX2-203ENST00000551604 SENP3Q9H4L4 574 aaPredicted RBP20.08■□□□□ 0.81
CUX2-203ENST00000551604 PHF23Q9BUL5 403 aaPredicted RBP19.85■□□□□ 0.77
CUX2-203ENST00000551604 FOXD1Q16676 465 aa18.79■□□□□ 0.6
CUX2-203ENST00000551604 PLPPR3Q6T4P5 718 aa17.68■□□□□ 0.42
CUX2-203ENST00000551604 MSH5O43196 834 aa17.57■□□□□ 0.4
CUX2-203ENST00000551604 PIAS4Q8N2W9 510 aaPredicted RBP17.54■□□□□ 0.4
CUX2-203ENST00000551604 PPP6R1Q9UPN7 881 aa17.5■□□□□ 0.39
CUX2-203ENST00000551604 ADRA2BP18089 450 aa17.46■□□□□ 0.39
CUX2-203ENST00000551604 POTEDQ86YR6 584 aa17.45■□□□□ 0.38
CUX2-203ENST00000551604 MAPK8IP2Q13387 824 aaPredicted RBP16.09■□□□□ 0.17
CUX2-203ENST00000551604 DMRT2Q9Y5R5 561 aa15.91■□□□□ 0.14
CUX2-203ENST00000551604 SCAF1Q9H7N4 1312 aaKnown RBP15.85■□□□□ 0.13
CUX2-203ENST00000551604 PPP4R3CPQ6ZMV5 832 aa15.53■□□□□ 0.08
CUX2-203ENST00000551604 DCAF8L1A6NGE4 600 aa15.39■□□□□ 0.05
CUX2-203ENST00000551604 HOXD11P31277 338 aaPredicted RBP15.25■□□□□ 0.03
CUX2-203ENST00000551604 CACNB1Q02641 598 aaPredicted RBP15.24■□□□□ 0.03
CUX2-203ENST00000551604 CNKSR2Q8WXI2 1034 aa15.22■□□□□ 0.03
CUX2-203ENST00000551604 RNF216Q9NWF9 866 aaPredicted RBP15.11■□□□□ 0.01
CUX2-203ENST00000551604 RNF39Q9H2S5 420 aa15□□□□□ -0.01
CUX2-203ENST00000551604 NCBP3Q53F19 620 aaKnown RBP14.84□□□□□ -0.03
CUX2-203ENST00000551604 KCNA4P22459 653 aa14.78□□□□□ -0.04
CUX2-203ENST00000551604 C1QBPQ07021 282 aaKnown RBP14.74□□□□□ -0.05
CUX2-203ENST00000551604 NPM3O75607 178 aaKnown RBP14.67□□□□□ -0.06
CUX2-203ENST00000551604 DNAJC5BQ9UF47 199 aa14.64□□□□□ -0.07
CUX2-203ENST00000551604 EHMT2Q96KQ7 1210 aa14.61□□□□□ -0.07
CUX2-203ENST00000551604 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.61□□□□□ -0.07
CUX2-203ENST00000551604 SLC4A1APQ9BWU0 796 aaKnown RBP14.28□□□□□ -0.12
CUX2-203ENST00000551604 U3KPZ7 1027 aaPredicted RBP14.27□□□□□ -0.13
CUX2-203ENST00000551604 SPINK5Q9NQ38 1064 aaPredicted RBP14.15□□□□□ -0.14
CUX2-203ENST00000551604 CAPN15O75808 1086 aa14.13□□□□□ -0.15
CUX2-203ENST00000551604 CSRNP3Q8WYN3 585 aa14.09□□□□□ -0.15
CUX2-203ENST00000551604 SLC4A2P04920 1241 aa14.05□□□□□ -0.16
CUX2-203ENST00000551604 DSG3P32926 999 aa14.03□□□□□ -0.16
CUX2-203ENST00000551604 TRHP20396 242 aaPredicted RBP13.88□□□□□ -0.19
CUX2-203ENST00000551604 ABCB7O75027 752 aa13.83□□□□□ -0.2
CUX2-203ENST00000551604 APLP2Q06481 763 aa13.76□□□□□ -0.21
CUX2-203ENST00000551604 ZNF219Q9P2Y4 722 aaPredicted RBP13.75□□□□□ -0.21
CUX2-203ENST00000551604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.73□□□□□ -0.21
CUX2-203ENST00000551604 HNRNPUL2Q1KMD3 747 aaKnown RBP13.73□□□□□ -0.21
CUX2-203ENST00000551604 SAMD1Q6SPF0 538 aaPredicted RBP13.67□□□□□ -0.22
CUX2-203ENST00000551604 POTEHQ6S545 545 aa13.65□□□□□ -0.22
CUX2-203ENST00000551604 ZBTB22O15209 634 aa13.56□□□□□ -0.24
CUX2-203ENST00000551604 MYCNP04198 464 aaPredicted RBP13.54□□□□□ -0.24
CUX2-203ENST00000551604 FOXD4L1Q9NU39 408 aa13.5□□□□□ -0.25
CUX2-203ENST00000551604 POLA2Q14181 598 aa13.45□□□□□ -0.26
CUX2-203ENST00000551604 ATF5Q9Y2D1 282 aaPredicted RBP13.33□□□□□ -0.28
CUX2-203ENST00000551604 RBM42Q9BTD8 480 aaKnown RBP13.32□□□□□ -0.28
CUX2-203ENST00000551604 CHRDL2Q6WN34 429 aa13.15□□□□□ -0.3
CUX2-203ENST00000551604 ZBTB12Q9Y330 459 aaPredicted RBP13.06□□□□□ -0.32
CUX2-203ENST00000551604 OSCARQ8IYS5 282 aa13.04□□□□□ -0.32
CUX2-203ENST00000551604 ATXN8OSP0DMR3 200 aa13.02□□□□□ -0.33
CUX2-203ENST00000551604 AKT1S1Q96B36 256 aa13.01□□□□□ -0.33
CUX2-203ENST00000551604 REM2Q8IYK8 340 aaPredicted RBP12.93□□□□□ -0.34
CUX2-203ENST00000551604 AMER1Q5JTC6 1135 aaPredicted RBP12.91□□□□□ -0.34
CUX2-203ENST00000551604 PIP4P2Q8N4L2 257 aa12.83□□□□□ -0.36
CUX2-203ENST00000551604 PITPNM1O00562 1244 aa12.82□□□□□ -0.36
CUX2-203ENST00000551604 FKBP8Q14318 412 aa12.76□□□□□ -0.37
CUX2-203ENST00000551604 RTN4Q9NQC3 1192 aaKnown RBP12.76□□□□□ -0.37
CUX2-203ENST00000551604 FBLN2P98095 1184 aa12.74□□□□□ -0.37
CUX2-203ENST00000551604 SLC24A1O60721 1099 aa12.73□□□□□ -0.37
CUX2-203ENST00000551604 SP7Q8TDD2 431 aaPredicted RBP12.71□□□□□ -0.37
CUX2-203ENST00000551604 FXR2P51116 673 aaKnown RBP eCLIP12.69□□□□□ -0.38
CUX2-203ENST00000551604 SPDYE2BA6NHP3 402 aa12.67□□□□□ -0.38
CUX2-203ENST00000551604 SPDYE6P0CI01 402 aa12.67□□□□□ -0.38
CUX2-203ENST00000551604 MKRN4PQ13434 485 aaPredicted RBP12.67□□□□□ -0.38
CUX2-203ENST00000551604 SPDYE2Q495Y8 402 aa12.67□□□□□ -0.38
CUX2-203ENST00000551604 HAX1O00165 279 aa12.65□□□□□ -0.38
CUX2-203ENST00000551604 CLEC11AQ9Y240 323 aa12.58□□□□□ -0.4
CUX2-203ENST00000551604 ZNF692Q9BU19 519 aaPredicted RBP12.56□□□□□ -0.4
CUX2-203ENST00000551604 EVX2Q03828 476 aa12.51□□□□□ -0.41
CUX2-203ENST00000551604 SPDYE1Q8NFV5 336 aaPredicted RBP12.5□□□□□ -0.41
CUX2-203ENST00000551604 PRKAR2AP13861 404 aaKnown RBP12.49□□□□□ -0.41
CUX2-203ENST00000551604 SSUH2Q9Y2M2 353 aa12.49□□□□□ -0.41
CUX2-203ENST00000551604 PABPN1Q86U42 306 aaKnown RBP eCLIP12.38□□□□□ -0.43
CUX2-203ENST00000551604 CHADLQ6NUI6 762 aa12.37□□□□□ -0.43
CUX2-203ENST00000551604 PRR29P0C7W0 189 aa12.31□□□□□ -0.44
CUX2-203ENST00000551604 C19orf67A6NJJ6 358 aa12.29□□□□□ -0.44
CUX2-203ENST00000551604 FBXO3Q9UK99 471 aa12.25□□□□□ -0.45
CUX2-203ENST00000551604 GABBR2O75899 941 aa12.17□□□□□ -0.46
CUX2-203ENST00000551604 SPDYE4A6NLX3 237 aa12.12□□□□□ -0.47
CUX2-203ENST00000551604 FARP1Q9Y4F1 1045 aaPredicted RBP12.1□□□□□ -0.47
CUX2-203ENST00000551604 CD44P16070 742 aaKnown RBP12.08□□□□□ -0.48
CUX2-203ENST00000551604 PROM2Q8N271 834 aa11.97□□□□□ -0.49
CUX2-203ENST00000551604 CREBZFQ9NS37 354 aa11.97□□□□□ -0.49
CUX2-203ENST00000551604 VASPP50552 380 aaPredicted RBP11.95□□□□□ -0.5
CUX2-203ENST00000551604 LHX8Q68G74 356 aa11.94□□□□□ -0.5
CUX2-203ENST00000551604 POTEIP0CG38 1075 aa11.93□□□□□ -0.5
CUX2-203ENST00000551604 STAG3Q9UJ98 1225 aa11.93□□□□□ -0.5
CUX2-203ENST00000551604 ZRANB1Q9UGI0 708 aa11.91□□□□□ -0.5
CUX2-203ENST00000551604 PLCB2Q00722 1185 aa11.84□□□□□ -0.51
CUX2-203ENST00000551604 ZNF579Q8NAF0 562 aaKnown RBP11.84□□□□□ -0.51
CUX2-203ENST00000551604 DCBLD2Q96PD2 775 aa11.82□□□□□ -0.52
CUX2-203ENST00000551604 DCAF8L2P0C7V8 631 aa11.79□□□□□ -0.52
CUX2-203ENST00000551604 CLCN6P51797 869 aa11.79□□□□□ -0.52
CUX2-203ENST00000551604 IFNLR1Q8IU57 520 aaPredicted RBP11.79□□□□□ -0.52
CUX2-203ENST00000551604 GALR2O43603 387 aaPredicted RBP11.77□□□□□ -0.53
CUX2-203ENST00000551604 PHF12Q96QT6 1004 aa11.75□□□□□ -0.53
CUX2-203ENST00000551604 PAK3O75914 559 aaPredicted RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms