RNA–Protein interactions for RNA: ENST00000546849.1

NPAS3-204, Transcript of neuronal PAS domain protein 3, humanhuman

TSL 3

Gene NPAS3, Length 464 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-204ENST00000546849 AEBP2Q6ZN18 517 aaPredicted RBP30.73■■■□□ 2.51
NPAS3-204ENST00000546849 CHIC1Q5VXU3 224 aa29.22■■■□□ 2.27
NPAS3-204ENST00000546849 SENP3Q9H4L4 574 aaPredicted RBP26.12■■□□□ 1.77
NPAS3-204ENST00000546849 PHF23Q9BUL5 403 aaPredicted RBP25.84■■□□□ 1.73
NPAS3-204ENST00000546849 FOXD1Q16676 465 aa24.39■■□□□ 1.49
NPAS3-204ENST00000546849 PLPPR3Q6T4P5 718 aa23.35■■□□□ 1.33
NPAS3-204ENST00000546849 PPP6R1Q9UPN7 881 aa22.91■■□□□ 1.26
NPAS3-204ENST00000546849 ADRA2BP18089 450 aa22.81■■□□□ 1.24
NPAS3-204ENST00000546849 PIAS4Q8N2W9 510 aaPredicted RBP22.76■■□□□ 1.23
NPAS3-204ENST00000546849 MSH5O43196 834 aa22.73■■□□□ 1.23
NPAS3-204ENST00000546849 POTEDQ86YR6 584 aa22.09■■□□□ 1.13
NPAS3-204ENST00000546849 MAPK8IP2Q13387 824 aaPredicted RBP20.94■□□□□ 0.94
NPAS3-204ENST00000546849 SCAF1Q9H7N4 1312 aaKnown RBP20.79■□□□□ 0.92
NPAS3-204ENST00000546849 DMRT2Q9Y5R5 561 aa20.75■□□□□ 0.91
NPAS3-204ENST00000546849 PPP4R3CPQ6ZMV5 832 aa20.5■□□□□ 0.87
NPAS3-204ENST00000546849 KCNA4P22459 653 aa20.12■□□□□ 0.81
NPAS3-204ENST00000546849 CNKSR2Q8WXI2 1034 aa20.09■□□□□ 0.81
NPAS3-204ENST00000546849 HOXD11P31277 338 aaPredicted RBP20.04■□□□□ 0.8
NPAS3-204ENST00000546849 RNF216Q9NWF9 866 aaPredicted RBP19.89■□□□□ 0.77
NPAS3-204ENST00000546849 NCBP3Q53F19 620 aaKnown RBP19.87■□□□□ 0.77
NPAS3-204ENST00000546849 DCAF8L1A6NGE4 600 aa19.83■□□□□ 0.77
NPAS3-204ENST00000546849 NPM3O75607 178 aaKnown RBP19.46■□□□□ 0.71
NPAS3-204ENST00000546849 CACNB1Q02641 598 aaPredicted RBP19.45■□□□□ 0.7
NPAS3-204ENST00000546849 RNF39Q9H2S5 420 aa19.44■□□□□ 0.7
NPAS3-204ENST00000546849 SLC4A1APQ9BWU0 796 aaKnown RBP19.33■□□□□ 0.68
NPAS3-204ENST00000546849 DNAJC5BQ9UF47 199 aa19.33■□□□□ 0.68
NPAS3-204ENST00000546849 EHMT2Q96KQ7 1210 aa19.28■□□□□ 0.68
NPAS3-204ENST00000546849 C1QBPQ07021 282 aaKnown RBP19.14■□□□□ 0.65
NPAS3-204ENST00000546849 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.03■□□□□ 0.64
NPAS3-204ENST00000546849 CSRNP3Q8WYN3 585 aa18.71■□□□□ 0.59
NPAS3-204ENST00000546849 U3KPZ7 1027 aaPredicted RBP18.69■□□□□ 0.58
NPAS3-204ENST00000546849 SLC4A2P04920 1241 aa18.6■□□□□ 0.57
NPAS3-204ENST00000546849 FOXD4L1Q9NU39 408 aa18.47■□□□□ 0.55
NPAS3-204ENST00000546849 ZBTB22O15209 634 aa18.43■□□□□ 0.54
NPAS3-204ENST00000546849 SPINK5Q9NQ38 1064 aaPredicted RBP18.41■□□□□ 0.54
NPAS3-204ENST00000546849 CAPN15O75808 1086 aa18.31■□□□□ 0.52
NPAS3-204ENST00000546849 DSG3P32926 999 aa18.25■□□□□ 0.51
NPAS3-204ENST00000546849 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.12■□□□□ 0.49
NPAS3-204ENST00000546849 HNRNPUL2Q1KMD3 747 aaKnown RBP18.12■□□□□ 0.49
NPAS3-204ENST00000546849 APLP2Q06481 763 aa18.08■□□□□ 0.48
NPAS3-204ENST00000546849 TRHP20396 242 aaPredicted RBP18.05■□□□□ 0.48
NPAS3-204ENST00000546849 MYCNP04198 464 aaPredicted RBP18.03■□□□□ 0.48
NPAS3-204ENST00000546849 SAMD1Q6SPF0 538 aaPredicted RBP18.03■□□□□ 0.48
NPAS3-204ENST00000546849 ZNF219Q9P2Y4 722 aaPredicted RBP18■□□□□ 0.47
NPAS3-204ENST00000546849 ABCB7O75027 752 aa17.91■□□□□ 0.46
NPAS3-204ENST00000546849 ATXN8OSP0DMR3 200 aa17.77■□□□□ 0.44
NPAS3-204ENST00000546849 POLA2Q14181 598 aa17.61■□□□□ 0.41
NPAS3-204ENST00000546849 ATF5Q9Y2D1 282 aaPredicted RBP17.61■□□□□ 0.41
NPAS3-204ENST00000546849 RBM42Q9BTD8 480 aaKnown RBP17.33■□□□□ 0.36
NPAS3-204ENST00000546849 POTEHQ6S545 545 aa17.32■□□□□ 0.36
NPAS3-204ENST00000546849 ZBTB12Q9Y330 459 aaPredicted RBP17.19■□□□□ 0.34
NPAS3-204ENST00000546849 FKBP8Q14318 412 aa17.03■□□□□ 0.32
NPAS3-204ENST00000546849 OSCARQ8IYS5 282 aa17.02■□□□□ 0.32
NPAS3-204ENST00000546849 AKT1S1Q96B36 256 aa16.99■□□□□ 0.31
NPAS3-204ENST00000546849 CHRDL2Q6WN34 429 aa16.96■□□□□ 0.31
NPAS3-204ENST00000546849 FBLN2P98095 1184 aa16.85■□□□□ 0.29
NPAS3-204ENST00000546849 REM2Q8IYK8 340 aaPredicted RBP16.85■□□□□ 0.29
NPAS3-204ENST00000546849 MKRN4PQ13434 485 aaPredicted RBP16.8■□□□□ 0.28
NPAS3-204ENST00000546849 SPDYE2BA6NHP3 402 aa16.71■□□□□ 0.27
NPAS3-204ENST00000546849 SPDYE6P0CI01 402 aa16.71■□□□□ 0.27
NPAS3-204ENST00000546849 SPDYE2Q495Y8 402 aa16.71■□□□□ 0.27
NPAS3-204ENST00000546849 PITPNM1O00562 1244 aa16.66■□□□□ 0.26
NPAS3-204ENST00000546849 SPDYE4A6NLX3 237 aa16.61■□□□□ 0.25
NPAS3-204ENST00000546849 PIP4P2Q8N4L2 257 aa16.59■□□□□ 0.25
NPAS3-204ENST00000546849 FXR2P51116 673 aaKnown RBP eCLIP16.53■□□□□ 0.24
NPAS3-204ENST00000546849 ZNF692Q9BU19 519 aaPredicted RBP16.53■□□□□ 0.24
NPAS3-204ENST00000546849 SSUH2Q9Y2M2 353 aa16.52■□□□□ 0.24
NPAS3-204ENST00000546849 SPDYE1Q8NFV5 336 aaPredicted RBP16.39■□□□□ 0.21
NPAS3-204ENST00000546849 FBXO3Q9UK99 471 aa16.37■□□□□ 0.21
NPAS3-204ENST00000546849 CLEC11AQ9Y240 323 aa16.36■□□□□ 0.21
NPAS3-204ENST00000546849 PABPN1Q86U42 306 aaKnown RBP eCLIP16.29■□□□□ 0.2
NPAS3-204ENST00000546849 AMER1Q5JTC6 1135 aaPredicted RBP16.26■□□□□ 0.19
NPAS3-204ENST00000546849 SP7Q8TDD2 431 aaPredicted RBP16.26■□□□□ 0.19
NPAS3-204ENST00000546849 HAX1O00165 279 aa16.24■□□□□ 0.19
NPAS3-204ENST00000546849 PRKAR2AP13861 404 aaKnown RBP16.22■□□□□ 0.19
NPAS3-204ENST00000546849 PROM2Q8N271 834 aa16.22■□□□□ 0.19
NPAS3-204ENST00000546849 EVX2Q03828 476 aa16.13■□□□□ 0.17
NPAS3-204ENST00000546849 RTN4Q9NQC3 1192 aaKnown RBP16.13■□□□□ 0.17
NPAS3-204ENST00000546849 PRR29P0C7W0 189 aa16.11■□□□□ 0.17
NPAS3-204ENST00000546849 CHADLQ6NUI6 762 aa16.08■□□□□ 0.16
NPAS3-204ENST00000546849 VASPP50552 380 aaPredicted RBP16.06■□□□□ 0.16
NPAS3-204ENST00000546849 C19orf67A6NJJ6 358 aa15.98■□□□□ 0.15
NPAS3-204ENST00000546849 STAG3Q9UJ98 1225 aa15.93■□□□□ 0.14
NPAS3-204ENST00000546849 FARP1Q9Y4F1 1045 aaPredicted RBP15.84■□□□□ 0.13
NPAS3-204ENST00000546849 PLCD3Q8N3E9 789 aa15.83■□□□□ 0.12
NPAS3-204ENST00000546849 KLHL34Q8N239 644 aa15.82■□□□□ 0.12
NPAS3-204ENST00000546849 PLEKHG5O94827 1062 aa15.78■□□□□ 0.12
NPAS3-204ENST00000546849 IFNLR1Q8IU57 520 aaPredicted RBP15.78■□□□□ 0.12
NPAS3-204ENST00000546849 CREBZFQ9NS37 354 aa15.77■□□□□ 0.12
NPAS3-204ENST00000546849 MIER1Q8N108 512 aa15.75■□□□□ 0.11
NPAS3-204ENST00000546849 GABBR2O75899 941 aa15.72■□□□□ 0.11
NPAS3-204ENST00000546849 CD44P16070 742 aaKnown RBP15.7■□□□□ 0.1
NPAS3-204ENST00000546849 SPOCK2Q92563 424 aa15.65■□□□□ 0.1
NPAS3-204ENST00000546849 ZBTB47Q9UFB7 747 aaPredicted RBP15.64■□□□□ 0.09
NPAS3-204ENST00000546849 MNX1P50219 401 aaPredicted RBP15.54■□□□□ 0.08
NPAS3-204ENST00000546849 DCAF8L2P0C7V8 631 aa15.5■□□□□ 0.07
NPAS3-204ENST00000546849 ZRANB1Q9UGI0 708 aa15.49■□□□□ 0.07
NPAS3-204ENST00000546849 ZNF579Q8NAF0 562 aaKnown RBP15.48■□□□□ 0.07
NPAS3-204ENST00000546849 CLCN6P51797 869 aa15.47■□□□□ 0.07
NPAS3-204ENST00000546849 POTEIP0CG38 1075 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms