RNA–Protein interactions for RNA: ENST00000538418.1

CD9-207, Transcript of CD9 molecule, humanhuman

TSL 2

Gene CD9, Length 441 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-207ENST00000538418 CHIC1Q5VXU3 224 aa30.13■■■□□ 2.41
CD9-207ENST00000538418 AEBP2Q6ZN18 517 aaPredicted RBP29.46■■■□□ 2.31
CD9-207ENST00000538418 PHF23Q9BUL5 403 aaPredicted RBP26.67■■□□□ 1.86
CD9-207ENST00000538418 PLPPR3Q6T4P5 718 aa25.09■■□□□ 1.61
CD9-207ENST00000538418 SENP3Q9H4L4 574 aaPredicted RBP24.75■■□□□ 1.55
CD9-207ENST00000538418 EHMT2Q96KQ7 1210 aa23.48■■□□□ 1.35
CD9-207ENST00000538418 ADRA2BP18089 450 aa23.47■■□□□ 1.35
CD9-207ENST00000538418 KCNA4P22459 653 aa23.37■■□□□ 1.33
CD9-207ENST00000538418 PPP6R1Q9UPN7 881 aa23.08■■□□□ 1.29
CD9-207ENST00000538418 FOXD1Q16676 465 aa22.83■■□□□ 1.25
CD9-207ENST00000538418 CSRNP3Q8WYN3 585 aa22.57■■□□□ 1.2
CD9-207ENST00000538418 SLC4A1APQ9BWU0 796 aaKnown RBP22.5■■□□□ 1.19
CD9-207ENST00000538418 PPP4R3CPQ6ZMV5 832 aa22.3■■□□□ 1.16
CD9-207ENST00000538418 NCBP3Q53F19 620 aaKnown RBP22.09■■□□□ 1.13
CD9-207ENST00000538418 PIAS4Q8N2W9 510 aaPredicted RBP21.86■■□□□ 1.09
CD9-207ENST00000538418 NPM3O75607 178 aaKnown RBP21.8■■□□□ 1.08
CD9-207ENST00000538418 ZBTB22O15209 634 aa21.54■■□□□ 1.04
CD9-207ENST00000538418 CNKSR2Q8WXI2 1034 aa21.35■■□□□ 1.01
CD9-207ENST00000538418 SLC24A1O60721 1099 aa21.22■□□□□ 0.99
CD9-207ENST00000538418 SCAF1Q9H7N4 1312 aaKnown RBP21.13■□□□□ 0.97
CD9-207ENST00000538418 FOXD4L1Q9NU39 408 aa21.1■□□□□ 0.97
CD9-207ENST00000538418 RTN4Q9NQC3 1192 aaKnown RBP20.97■□□□□ 0.95
CD9-207ENST00000538418 AMER1Q5JTC6 1135 aaPredicted RBP20.96■□□□□ 0.95
CD9-207ENST00000538418 DNAJC5BQ9UF47 199 aa20.94■□□□□ 0.94
CD9-207ENST00000538418 RNF216Q9NWF9 866 aaPredicted RBP20.58■□□□□ 0.89
CD9-207ENST00000538418 MAPK8IP2Q13387 824 aaPredicted RBP20.57■□□□□ 0.88
CD9-207ENST00000538418 MSH5O43196 834 aa20.48■□□□□ 0.87
CD9-207ENST00000538418 FKBP8Q14318 412 aa20.31■□□□□ 0.84
CD9-207ENST00000538418 SLC4A2P04920 1241 aa20.24■□□□□ 0.83
CD9-207ENST00000538418 ATXN8OSP0DMR3 200 aa20.23■□□□□ 0.83
CD9-207ENST00000538418 HOXD11P31277 338 aaPredicted RBP20.14■□□□□ 0.81
CD9-207ENST00000538418 MYCNP04198 464 aaPredicted RBP20.1■□□□□ 0.81
CD9-207ENST00000538418 DMRT2Q9Y5R5 561 aa20■□□□□ 0.79
CD9-207ENST00000538418 ATF5Q9Y2D1 282 aaPredicted RBP19.48■□□□□ 0.71
CD9-207ENST00000538418 PLCB2Q00722 1185 aa19.29■□□□□ 0.68
CD9-207ENST00000538418 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.26■□□□□ 0.67
CD9-207ENST00000538418 HNRNPUL2Q1KMD3 747 aaKnown RBP19.26■□□□□ 0.67
CD9-207ENST00000538418 SAMD1Q6SPF0 538 aaPredicted RBP19.26■□□□□ 0.67
CD9-207ENST00000538418 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.19■□□□□ 0.66
CD9-207ENST00000538418 FBXO3Q9UK99 471 aa19.19■□□□□ 0.66
CD9-207ENST00000538418 DCAF8L1A6NGE4 600 aa19.06■□□□□ 0.64
CD9-207ENST00000538418 U3KPZ7 1027 aaPredicted RBP19.04■□□□□ 0.64
CD9-207ENST00000538418 HAP1P54257 671 aaPredicted RBP19.02■□□□□ 0.64
CD9-207ENST00000538418 ZNF219Q9P2Y4 722 aaPredicted RBP18.98■□□□□ 0.63
CD9-207ENST00000538418 SPDYE4A6NLX3 237 aa18.95■□□□□ 0.62
CD9-207ENST00000538418 BCANQ96GW7 911 aa18.92■□□□□ 0.62
CD9-207ENST00000538418 VASPP50552 380 aaPredicted RBP18.89■□□□□ 0.61
CD9-207ENST00000538418 DCAF8L2P0C7V8 631 aa18.86■□□□□ 0.61
CD9-207ENST00000538418 PROM2Q8N271 834 aa18.83■□□□□ 0.6
CD9-207ENST00000538418 PRKCSHP14314 528 aaPredicted RBP18.77■□□□□ 0.6
CD9-207ENST00000538418 VSIG10Q8N0Z9 540 aa18.77■□□□□ 0.6
CD9-207ENST00000538418 IFNLR1Q8IU57 520 aaPredicted RBP18.76■□□□□ 0.59
CD9-207ENST00000538418 APLP2Q06481 763 aa18.72■□□□□ 0.59
CD9-207ENST00000538418 TAOK2Q9UL54 1235 aa18.72■□□□□ 0.59
CD9-207ENST00000538418 MKRN4PQ13434 485 aaPredicted RBP18.7■□□□□ 0.58
CD9-207ENST00000538418 PKD2Q13563 968 aa18.67■□□□□ 0.58
CD9-207ENST00000538418 FBLN2P98095 1184 aa18.54■□□□□ 0.56
CD9-207ENST00000538418 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.47■□□□□ 0.55
CD9-207ENST00000538418 BBXQ8WY36 941 aaPredicted RBP18.45■□□□□ 0.54
CD9-207ENST00000538418 KDM2AQ9Y2K7 1162 aa18.43■□□□□ 0.54
CD9-207ENST00000538418 TPRNQ4KMQ1 711 aa18.42■□□□□ 0.54
CD9-207ENST00000538418 PAXIP1Q6ZW49 1069 aaPredicted RBP18.34■□□□□ 0.53
CD9-207ENST00000538418 ECM2O94769 699 aaPredicted RBP18.3■□□□□ 0.52
CD9-207ENST00000538418 NPM1P06748 294 aaKnown RBP eCLIP18.29■□□□□ 0.52
CD9-207ENST00000538418 SPOCK2Q92563 424 aa18.29■□□□□ 0.52
CD9-207ENST00000538418 CFAP44Q96MT7 982 aa18.29■□□□□ 0.52
CD9-207ENST00000538418 KLHL34Q8N239 644 aa18.25■□□□□ 0.51
CD9-207ENST00000538418 POLA2Q14181 598 aa18.24■□□□□ 0.51
CD9-207ENST00000538418 TRHP20396 242 aaPredicted RBP18.21■□□□□ 0.51
CD9-207ENST00000538418 SPRYD3Q8NCJ5 442 aa18.13■□□□□ 0.49
CD9-207ENST00000538418 SPINK5Q9NQ38 1064 aaPredicted RBP18.1■□□□□ 0.49
CD9-207ENST00000538418 RGL2O15211 777 aa18.08■□□□□ 0.48
CD9-207ENST00000538418 TSHZ2Q9NRE2 1034 aa18.07■□□□□ 0.48
CD9-207ENST00000538418 ZBTB12Q9Y330 459 aaPredicted RBP18.02■□□□□ 0.48
CD9-207ENST00000538418 STAG3Q9UJ98 1225 aa18.01■□□□□ 0.47
CD9-207ENST00000538418 CAPN15O75808 1086 aa17.95■□□□□ 0.46
CD9-207ENST00000538418 PLCD3Q8N3E9 789 aa17.95■□□□□ 0.46
CD9-207ENST00000538418 CHGAP10645 457 aaKnown RBP17.88■□□□□ 0.45
CD9-207ENST00000538418 NBR1Q14596 966 aa17.86■□□□□ 0.45
CD9-207ENST00000538418 DNAJC5Q9H3Z4 198 aa17.84■□□□□ 0.45
CD9-207ENST00000538418 MIER1Q8N108 512 aa17.82■□□□□ 0.44
CD9-207ENST00000538418 ZNF692Q9BU19 519 aaPredicted RBP17.82■□□□□ 0.44
CD9-207ENST00000538418 CIZ1Q9ULV3 898 aaPredicted RBP17.77■□□□□ 0.44
CD9-207ENST00000538418 ABCB7O75027 752 aa17.74■□□□□ 0.43
CD9-207ENST00000538418 RNF39Q9H2S5 420 aa17.69■□□□□ 0.42
CD9-207ENST00000538418 TIMELESSQ9UNS1 1208 aa17.67■□□□□ 0.42
CD9-207ENST00000538418 SSUH2Q9Y2M2 353 aa17.67■□□□□ 0.42
CD9-207ENST00000538418 HS6ST3Q8IZP7 471 aa17.66■□□□□ 0.42
CD9-207ENST00000538418 SPDYE2BA6NHP3 402 aa17.65■□□□□ 0.42
CD9-207ENST00000538418 SPDYE6P0CI01 402 aa17.65■□□□□ 0.42
CD9-207ENST00000538418 SPDYE2Q495Y8 402 aa17.65■□□□□ 0.42
CD9-207ENST00000538418 TRIM41Q8WV44 630 aa17.65■□□□□ 0.42
CD9-207ENST00000538418 ZBTB47Q9UFB7 747 aaPredicted RBP17.65■□□□□ 0.42
CD9-207ENST00000538418 PABPN1Q86U42 306 aaKnown RBP eCLIP17.63■□□□□ 0.41
CD9-207ENST00000538418 TULP1O00294 542 aaPredicted RBP17.61■□□□□ 0.41
CD9-207ENST00000538418 PLEKHG5O94827 1062 aa17.61■□□□□ 0.41
CD9-207ENST00000538418 GTF3C3Q9Y5Q9 886 aa17.57■□□□□ 0.4
CD9-207ENST00000538418 C1QBPQ07021 282 aaKnown RBP17.55■□□□□ 0.4
CD9-207ENST00000538418 OSCARQ8IYS5 282 aa17.55■□□□□ 0.4
CD9-207ENST00000538418 RNF25Q96BH1 459 aaPredicted RBP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms